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S15_scaffold_96_curated_1

Organism: S15_RifCSP_Pseudomonas_62_25_curated

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(343..1779)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, GntR family/aminotransferase, classes I and II {ECO:0000313|EMBL:AAY92140.1}; EC=2.6.1.- {ECO:0000313|EMBL:AAY92140.1};; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.8
  • Coverage: 469.0
  • Bit_score: 930
  • Evalue 7.80e-268
HTH-type transcriptional regulator YdcR n=2 Tax=Pseudomonas protegens RepID=R4RJX9_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 99.4
  • Coverage: 478.0
  • Bit_score: 943
  • Evalue 8.30e-272
  • rbh
ydcR; HTH-type transcriptional regulator YdcR similarity KEGG
DB: KEGG
  • Identity: 99.4
  • Coverage: 478.0
  • Bit_score: 943
  • Evalue 2.40e-272
  • rbh

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Taxonomy

Pseudomonas protegens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1437
ATGACCAGACTGGATCTTGCACCGCAGATGAAACGCTACGAAAAATTCGCCGACGACATCGCCGAACTGATCCGCTCCGGGGTCCTGGGCCCTGGCCAGCGCGTGCCTTCGGTGCGCTACGCCAGCCAGACCTACGGGGTCAGCCCGTCAACCGTGTTTCAGGCCTATTACCTGCTGGAGCGTCGCGGCCTGATCCGTGCCCGCCCGCGCTCCGGCTACTTCGTCAATGCCCACGCACCGAGCCCGTTCTCCGAGCCGGTGATCAGCAGCGAAGTCAATGAATCCACCGAAGTCGATGTCAGCGAACTGGTGTTCTCGGTGCTCGACTCGATCAAGGACCCGAGCACGGTGCCCTTCGGCTCGGCCTTCCCCAGCCCGACCCTGTTCCCCTTGCAACGCCTGTCCCGCTCCCTGGCCAGCGCCAGCCGCGAGATGGACCCGCGGGTGGTGGTCACCGACATGTCCCCGGGCAACCCGCAACTGCGCCGCCAGATCGCCCTGCGCTACATGGTGGCCGGGCTGATGCTGCCCATGGAGGAGCTGCTGATCACCAACGGCGCCCTGGAGGCCCTGAACCTGTGCCTGCAGGCCGTGACCGAGCCCGGCGACCTGGTGGCCATCGAGGCCCCGGCCTTCTATGCCAGCCTGCAAGTGCTGGAACGGCTCAAGCTCAAGGCGGTGGAAATTCCCGTGCACCCGCGAGACGGCATCGACCTTGGGGTCCTGGCCCAGACCCTGGAGCGGCACCCGATCAAGGCCTGCTGGTGCATGACCAACTTCCAGAACCCCATGGGCGCGAGCATGCCCGAGGCCAAGAAGCAGGAACTGGTGGAACTGCTGCGCCAGCATCAAGTGCCACTGATCGAAGACGACGTCTACGCCGAGCTGTACTACGGCCAGCAAGCGCCAAAACCGGCCAAGGCCTTCGACACCGAAGGCCTGGTGATGCACTGCGGCTCCTTCGCCAAGAGCCTGGCCCCCGGCTACCGCATTGGCTGGGTGGCCGCCGGGCGTTACGCGCAGAAAATCGAACGGCTGAAACTCATGACCTCGCTATGCGCCTCGATGCCGGCCCAGGCGGCGATTGCCGACTACCTGCAGCACGGCGGCTACGACCGCCACCTGCGCAAACTGCGCTACGCCCTGGAAGAACAGCAGAGCGCCATGCTGGCGGCGATTGCCCGCTACTTCCCGGCGCAGACCCGGGTCAGCCAGCCGGCGGGCGGCTACTTCCTGTGGCTGGAACTGCCACCGCAGATGGACTCGTTGAAACTGTTCCAGATGGCCCTGGCCCAGGGCATCAGCATCGCCCCCGGGCCGATCTTTTCCCCGACCCAGCGCTTTCGCAACTGCATCCGCCTGAACTACGGCAGCCCCTGGAACGAAGCGGCGGAACAGGCCATGGAAACCCTGGGGCGGATCATCCGCTCCTTTTGA
PROTEIN sequence
Length: 479
MTRLDLAPQMKRYEKFADDIAELIRSGVLGPGQRVPSVRYASQTYGVSPSTVFQAYYLLERRGLIRARPRSGYFVNAHAPSPFSEPVISSEVNESTEVDVSELVFSVLDSIKDPSTVPFGSAFPSPTLFPLQRLSRSLASASREMDPRVVVTDMSPGNPQLRRQIALRYMVAGLMLPMEELLITNGALEALNLCLQAVTEPGDLVAIEAPAFYASLQVLERLKLKAVEIPVHPRDGIDLGVLAQTLERHPIKACWCMTNFQNPMGASMPEAKKQELVELLRQHQVPLIEDDVYAELYYGQQAPKPAKAFDTEGLVMHCGSFAKSLAPGYRIGWVAAGRYAQKIERLKLMTSLCASMPAQAAIADYLQHGGYDRHLRKLRYALEEQQSAMLAAIARYFPAQTRVSQPAGGYFLWLELPPQMDSLKLFQMALAQGISIAPGPIFSPTQRFRNCIRLNYGSPWNEAAEQAMETLGRIIRSF*