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S15_scaffold_36_curated_28

Organism: S15_RifCSP_Pseudomonas_62_25_curated

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(26486..27394)

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional activator TtdR n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R0F9_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 97.7
  • Coverage: 302.0
  • Bit_score: 582
  • Evalue 2.40e-163
  • rbh
ttdR1; HTH-type transcriptional activator TtdR similarity KEGG
DB: KEGG
  • Identity: 97.7
  • Coverage: 302.0
  • Bit_score: 582
  • Evalue 6.70e-164
  • rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AAY96124.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.4
  • Coverage: 302.0
  • Bit_score: 580
  • Evalue 1.30e-162

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Taxonomy

Pseudomonas protegens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 909
ATGCTGCGATTCGATGACCTGCAACTGTTCGTGCGGGCCGCGGACCTGGGCAGCCTGTCGGCGGCGGCCCGGGTCATGGACCTGTCGCCGGCGGTGGCCAGCGCCGCCCTCAAGCGCATCGAAGAACACTTGGGGGCGCGTTTGCTGGCCCGTTCCACCCGCAGCCTGCGTCTGACGGCCGAGGGCGAGGGCTTTCTTGAATACGCCCGCGCTGCCTTGAGCAACCTGGATGAAGGGCGGCGCCTGCTGGCCAGCGGACAGGATCAGGTCAGCGGCGTGTTGCAGCTTTCCGCGCCCTCTGACTTTGGTCGCAACCTGCTGCTGCCCTGGCTCGACGAGTTCCAGCGCGAGCATCCCAAGCTCAGCGTGCGCCTGCTGCTGGGGGACCGGATTGCCGATCTGTTCCGCCAGCCGGTGGACATTGCCCTGCGCTATGGCGAGCCGGAGGACTCCAGTCTGGTGGCACTGCCGATAGCCCCGGACAATCTCCGGGTCCTGTGTGCGGCCCCCAGCTACCTGGCCCGGCACGGCGAGCCGCGCCAGCTGGAGCAACTGGCCCAGCACAACTGCCTGCTGTACATGCTCGACAGCCGGGCCCACGACCTTTGGAGTTTTTATGACGGCAAGCGCGAGGTGAGCCTGACCGTCAGCGGCGACCGCCTGAGTGACGATGCCGATGTAGTGCGGCGCTGGGCGGTGGCCGGCGAAGGGATTGCCTACAAGTCCTGGCTGGATGTGGCCGCCGACGTGCTGGCCGGCCGCTTGCAGGTGCTGTTGCCGGAGTTGCGTTGCGAAGGCGCGTCGCTGAACCTTTTGTGCACCCATCGCGCGCACTTGAGCAAACCGGTCAAGCTGCTGCGGGACATGCTCCAGGAGCGCTGCGCCCAGATCAGCGCCCGCCGCCCGTAA
PROTEIN sequence
Length: 303
MLRFDDLQLFVRAADLGSLSAAARVMDLSPAVASAALKRIEEHLGARLLARSTRSLRLTAEGEGFLEYARAALSNLDEGRRLLASGQDQVSGVLQLSAPSDFGRNLLLPWLDEFQREHPKLSVRLLLGDRIADLFRQPVDIALRYGEPEDSSLVALPIAPDNLRVLCAAPSYLARHGEPRQLEQLAQHNCLLYMLDSRAHDLWSFYDGKREVSLTVSGDRLSDDADVVRRWAVAGEGIAYKSWLDVAADVLAGRLQVLLPELRCEGASLNLLCTHRAHLSKPVKLLRDMLQERCAQISARRP*