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S16_scaffold_511_curated_6

Organism: S16_Parvibaculum_lavamentivorans_63_43_curated

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Location: comp(4033..8226)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.0
  • Coverage: 1397.0
  • Bit_score: 2566
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RPOC_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 93.0
  • Coverage: 1397.0
  • Bit_score: 2566
  • Evalue 0.0
  • rbh
DNA-directed RNA polymerase subunit beta' similarity KEGG
DB: KEGG
  • Identity: 93.0
  • Coverage: 1397.0
  • Bit_score: 2566
  • Evalue 0.0
  • rbh

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Taxonomy

Parvibaculum lavamentivorans → Parvibaculum → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4194
ATGAACCAAGAGGTCATGAACCTTTTCAATCCGACGACGCCGGCGCAGACGTTTGACCAGATCAAGATTTCGATCGCCAGCCCGGAGCGGATCCATTCCTGGTCTTATGGCGAGATCAAGAAGCCAGAAACGATCAACTATCGTACGTTCAAGCCCGAACGCGACGGGCTTTTCTGCGCACGCATCTTCGGTCCGATCAAGGATTACGAATGCCTGTGCGGCAAGTACAAGCGGATGAAATACAAGGGTATCATCTGCGAAAAGTGCGGCGTGGAAGTGACGCTGTCGAAGGTTCGGCGCGAGCGCATGGGCCATATCGAACTTGCGGCGCCTGTCGCGCATATCTGGTTTCTGAAGTCGCTGCCGAGCCGCATCGGCATGTTGCTCGACATGACGCTGAAGGACCTGGAGCGTGTTCTCTATTTCGAGAACTATATCGTGCTTGAGCCGGGCCTCACATCGCTGAAGGAACGCCAGCTTCTGACCGAAGAGGAACTGCTGGACGCGCAGGACCAGCATGGTGAGGACAGCTTCACGGCCAAGATCGGCGCCGAAGCAATCCGCGACATTCTGGAGGCGCTCGATCTCGAAAAGACGGCTGCGGAGCTGCGCGTCGAGATTGCCGAGTCGACATCGGAACTGAAGCCGAAGAAGCTCGCCAAGCGCCTGAAACTGATCGAGGCGTTCATCGAGTCCGGAAACAAGCCGGAATGGATGATTATGACGGTGGTTCCGGTGATCCCGCCGGAATTGCGCCCGCTGGTACCGCTCGACGGCGGTCGCTTCGCGACTTCGGACCTCAACGACCTCTATCGCCGTGTCATCAACCGCAACAATCGTCTGAAGCGGCTGATGGAACTGCGCGCGCCGGACATCATCATTCGTAACGAAAAGCGGATGCTGCAGGAATCGGTCGATGCGTTGTTCGATAACGGCCGCCGTGGCCGCGTCATCACGGGCGCCAACAAGCGGCCGTTGAAGTCGCTCGCCGACATGCTGAAAGGCAAACAGGGCCGCTTCCGCCAGAACCTGCTCGGCAAGCGCGTCGACTATTCGGGCCGTTCGGTCATCGTGGTCGGTCCGGAGCTGAAGCTGCATCAGTGCGGTTTGCCGAAGAAGATGGCGCTTGAGTTGTTCAAGCCGTTTATCTATTCGCGCCTTGAGGCGAAGGGCCTGAGTGCCACTGTCAAACAGGCGAAGAAGCTGGTCGAGAAGGAGCGTCCCGAGGTCTGGGAAATTCTCGAACAGGTGATCCGCGAGCATCCGGTGCTTTTGAACCGTGCACCGACGCTGCATCGGCTCGGCATTCAGGCTTTCGAGCCGGTGTTGATCGAGGGCAAGGCGATCCAGCTGCATCCGCTCGTCTGCGCGGCCTTCAACGCCGACTTCGACGGCGATCAGATGGCTGTGCACGTTCCGCTGTCGCTTGAGGCGCAGCTCGAGGCGCGTGTGCTGATGATGTCGACCAACAACATTCTGCATCCTGCCAACGGTTCACCGATCATCGTGCCGTCGCAGGACATCGTTCTCGGTCTCTATTACGTGACGATCGAAAAGCAGAACGAACCGGGCGAGGGCATGGTGTTCTCCAGCGTCGCAGAGATCGAGCATGCGCTGGCGGCCAAGGCCGTGACGCTGCACGCCAAAATCAAAGCGCGCTATACGACGAAGGATGCGGACGGTAACCCGGTGACCCAGGTTGTCGATACAACACCGGGTCGGATGCTGGTTGGCGAACTTTTGCCGAAGCACCCGAATGTGCCCTTCGATCTGGTCAATCGACTGCAGACCAAGCGCGACATCTCCAAGATGATCGATGTGGTCTATCGTCATTGCGGTCAGAAGGAGACTGTCATCTTCTGCGACCAGATCATGGCACTCGGCTTCCGTCAGGCGTTCCGCGCCGGCATTTCGTTCGGTAAGGATGACATGGTCATTCCGGAAGAGAAGGCAAAGCTGGTCGAGGAGACGCGGTCGCTGACCACCGAGTATGAGCAACAGTATATCGACGGGCTGATTACGCAGGGTGAGAAGTACAACAAAGTCGTCGATGCCTGGGCGAAGTGCACCGATCGCGTCGCCGACGTGATGATGCAGAAGATTTCGGCCGTGCAGGTCGATGCCGAGACGAAGCGCGAGATGCCGATCAACTCGATCTACATGATGGCGCATTCGGGTGCGCGCGGTTCGCCCGCTCAGATGAAGCAGCTGGCCGGCATGCGTGGTCTGATGGCGAAGCCCTCGGGCGAAATCATCGAGACACCGATTATCTCAAACTTCAAGGAAGGTCTCACCGTTCTCGAATACTTCAACTCGACGCATGGCGCGCGCAAGGGGCTTGCCGACACCGCGCTCAAGACGGCGAACTCGGGTTATCTGACGCGCCGTCTCGTCGACGTTGCGCAGGACTCGATCATCACTGAAGAAGATTGCGGCACGGCGGGTGGTATCACTGTCCAGGCGGTGATTGAAGCGGGCGATGTCATCGTCTCGCTCGGCACCCGGGTTCTTGGCCGAACGACAGCGGAAGATGTGAAGGATCCGGCGACCGACAAGATCATCATCAAGAAGAACCACCTGATTGATGAAGCGGATGTGGACGTCATCGAAGAGGCTAACATCCAGTCGATCCGTATTCGCTCGATTTTGACCTGCGAGGCGGCCAACGGCGTTTGTGCGGCCTGCTACGGCCGCGATCTGGCACGTGGTACACCGGTGAACATGGGCGAGGCGGTGGGTGTCATCGCTGCCCAGTCGATCGGCGAACCGGGAACGCAGCTCACCATGCGCACGTTCCATATCGGCGGCACGGCGCAGGTGGTGGATTCGTCCTTTATCGAATCCAACCATCCGGGCACGATCAAGATCGTCAACCGTAACGTCGTCAAGGACTCGAACGGTGTTCTCGTTGTCATGGGCCGGAACGTTCAGGTTCAGGTCATCGACGAACATGGCGGCGAACGGGCGTCACACAAGCTCACCTACGGTTCACGTCTGAAAGTGGATGACGGCGCGACGATCACACGCGGTCAGCGTATCGCCGAATGGGATCCGTACACGATGCCGATCCTCACCGAGGTCAACGGCACGGTTGAGTTCGAGGATCTTGTTGACGGCGTGTCGATTCGTGAAGTGGCAGACGAGGCAACCGGTATTTCGAGCCGCGTCGTCGTCGACTGGCGCGCGAGCCCGCGCGGAAGTGAGTTGCGTCCTGCGGTCATCGTCAAGGATGCCAAAGGCAAGATCATGAAGCTCGCCAGCGGCAACGATGCGCGCTACCTGCTTTCGGTCGATGCCATCCTGTCAGTCGAGAACGGTGCAGATGTTCACGCCGGCGACGTGCTGGCGCGTATCCCGACCGAAGGCGCCAAGACGCGCGACATCACGGGCGGTCTGCCGCGCGTGGCGGAGCTCTTCGAAGCGCGGCGGCCGAAGGACCACGCGATCATTGCGGAAGTCACAGGGCGCGTTGAATTCGGCAAGGACTATAAGAACAAGCGCCGCATCATCGTGCATCCGTCGGATGAGAGCCTTGAGCCTGTCGAGTATCTGATCCCGAAGGGCAAGCACATCTCGGTGCAGGAAGGCGATGTCATCGAGAAGGGCGAGTTCATTCTCGACGGCCACCCGGCGCCCCACGACATCCTTGCTATTTCGGGTGTCGAGGAACTGGCGGCCTATCTCGTCAACGAAGTGCAGGACGTCTATCGCCTGCAGGGCGTGTCGATTAATGACAAGCACATCGAAGTGATCGTGCGCAACATGCTGCAGAAGGTGGAAATCACCAGCCCGGGCGACTCGATTTCGCTGCCCGGCGAGCAGATGGATCGCACGGAGTTCGACGAGATGAACTCCAAGCTCGAAGCGCAAGGCAAAGCCACGGCGTCGGCGAGCCCGGTGCTTCTTGGCATCACCAAGGCGAGCCTGCAGACCCGTTCCTTCATCTCGGCGGCGTCATTCCAGGAGACGACGCGCGTTCTGACCGAGGCGGCAGTGTCCGGCAAGGTCGATCAACTCGTCGGCCTGAAGGAAAATGTCATCGTCGGACGGCTCATCCCGGCCGGCACGGGCGGCATGTTGCAGCGTCTTCGTGGCGAGGCGCAAGCCCGCGACGAGAAGATCCTCGAGGATCAGGTCGCCGCGAACCCGGTCGTCACGCCTGAGGTTGAAACGGCGGGTGAGACGACGGCTTGA
PROTEIN sequence
Length: 1398
MNQEVMNLFNPTTPAQTFDQIKISIASPERIHSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSKVRRERMGHIELAAPVAHIWFLKSLPSRIGMLLDMTLKDLERVLYFENYIVLEPGLTSLKERQLLTEEELLDAQDQHGEDSFTAKIGAEAIRDILEALDLEKTAAELRVEIAESTSELKPKKLAKRLKLIEAFIESGNKPEWMIMTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRMLQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSATVKQAKKLVEKERPEVWEILEQVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHPANGSPIIVPSQDIVLGLYYVTIEKQNEPGEGMVFSSVAEIEHALAAKAVTLHAKIKARYTTKDADGNPVTQVVDTTPGRMLVGELLPKHPNVPFDLVNRLQTKRDISKMIDVVYRHCGQKETVIFCDQIMALGFRQAFRAGISFGKDDMVIPEEKAKLVEETRSLTTEYEQQYIDGLITQGEKYNKVVDAWAKCTDRVADVMMQKISAVQVDAETKREMPINSIYMMAHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDSIITEEDCGTAGGITVQAVIEAGDVIVSLGTRVLGRTTAEDVKDPATDKIIIKKNHLIDEADVDVIEEANIQSIRIRSILTCEAANGVCAACYGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFIESNHPGTIKIVNRNVVKDSNGVLVVMGRNVQVQVIDEHGGERASHKLTYGSRLKVDDGATITRGQRIAEWDPYTMPILTEVNGTVEFEDLVDGVSIREVADEATGISSRVVVDWRASPRGSELRPAVIVKDAKGKIMKLASGNDARYLLSVDAILSVENGADVHAGDVLARIPTEGAKTRDITGGLPRVAELFEARRPKDHAIIAEVTGRVEFGKDYKNKRRIIVHPSDESLEPVEYLIPKGKHISVQEGDVIEKGEFILDGHPAPHDILAISGVEELAAYLVNEVQDVYRLQGVSINDKHIEVIVRNMLQKVEITSPGDSISLPGEQMDRTEFDEMNSKLEAQGKATASASPVLLGITKASLQTRSFISAASFQETTRVLTEAAVSGKVDQLVGLKENVIVGRLIPAGTGGMLQRLRGEAQARDEKILEDQVAANPVVTPEVETAGETTA*