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S16_scaffold_5352_curated_2

Organism: S16_RifleBG_Stenotrophomonas_66_10_curated

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: comp(520..1098)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L6N7_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 93.8
  • Coverage: 192.0
  • Bit_score: 363
  • Evalue 1.10e-97
  • rbh
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EZP44152.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 192.0
  • Bit_score: 389
  • Evalue 2.00e-105
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 92.7
  • Coverage: 192.0
  • Bit_score: 360
  • Evalue 1.50e-97
  • rbh

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Taxonomy

Stenotrophomonas sp. RIT309 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 579
ATGCTCGACACCACCATGCCCGCGCCGCCTGCCGCCAACGACGTCGTCGACGAAACCGCCTTGGTACGTGCAGCGGCGGCCGGCGATACCGCTGCCTATGAACAGCTGTATCGGCAGCATGCGCCGCGGGTGTTTGCCACCCTGTGGCGGCTGTGTGGCGGGCAGCAGGCGCGTGCCGAGGATGCACTGCAGGAAGCGTTCCTGCAGGCATGGAAGGCACTGCCCGGCTTCCGTTTCGAGAGCAGCCTGTCGACCTGGCTGCATCGGTTGGGAGTGAACGCCGCGCTGATGGAACTGCGCGGTCGTGCCGCCGGGCATGACCACGACAGCCTGGACGACGTTGACGGTGGGCTGCCGGAGATGGCGGTGCATGACGGCTGCGCCGGCACCGAACGCGACCTGGAACGCGCGTTGGCGACCCTGCCGCCGCGCGCGCGTGCGGTCTTGGTGCTGCACGATATCGAAGGCTGGAAACACCATGAAATCGCCGGCCAGCTGCAGATGGCGGTCGGCAGTTCCAAAGCACAGCTGCATCGCGCGCGTGGCCTGCTGCGCGCGCGCCTGGGAGACATGACATGA
PROTEIN sequence
Length: 193
MLDTTMPAPPAANDVVDETALVRAAAAGDTAAYEQLYRQHAPRVFATLWRLCGGQQARAEDALQEAFLQAWKALPGFRFESSLSTWLHRLGVNAALMELRGRAAGHDHDSLDDVDGGLPEMAVHDGCAGTERDLERALATLPPRARAVLVLHDIEGWKHHEIAGQLQMAVGSSKAQLHRARGLLRARLGDMT*