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S25_scaffold_13888_curated_1

Organism: S25_RifleGW_Geobacter_56_8_curated

megabin RP 39 / 55 MC: 13 BSCG 44 / 51 MC: 17 ASCG 12 / 38 MC: 2
Location: comp(84..1295)

Top 3 Functional Annotations

Value Algorithm Source
Short chain amide porin n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCN0_GEOUR similarity UNIREF
DB: UNIREF100
  • Identity: 68.1
  • Coverage: 404.0
  • Bit_score: 567
  • Evalue 8.00e-159
  • rbh
phosphate-selective porin O and P similarity KEGG
DB: KEGG
  • Identity: 68.1
  • Coverage: 404.0
  • Bit_score: 567
  • Evalue 2.30e-159
  • rbh
Short chain amide porin {ECO:0000313|EMBL:ABQ24667.1}; Flags: Precursor;; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.1
  • Coverage: 404.0
  • Bit_score: 567
  • Evalue 1.10e-158

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Notes

May be part of a porin-cytochrome complex, Geobacter ExtI-like, but only feature on scaff Tyler Arbour (3/26/17)

Taxonomy

Geobacter uraniireducens → Geobacter → Desulfuromonadales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1212
ACAATGGGAAAAGTTACGAAACTACTAAAAATGTTGGGACTGGGAGCCGGTCTGGCGATGATTGCCGGCACTGCCTTTGCCGGTCCGCAAATTACCTTCGGTCCGGAGGAGCAAGGCTCCCTGCAGATCGATTACAAGGGGCAATTCCAGATGACGGTGCGGGACACCGGTTCTGGCCCGAACGATGATAACTCTACCATGTCCTTCAACTTCCGGCGTAACCGGCTTGCCTTGATGGGGGCGTACGGCGATGTCATCAGCCTGTATGTGCAGACTGAATTTCTGGAGAAGCAGGACATCGGCATCCTGACGGTCCGCGACACCGAGAGCGACTCCGAATTCCAACTCCTCGATGCTGTGATGCGTTTCGATCTTCACGATGCCTTCAAAGTCAATGTTGGCAAGTTCAAGTACAACTTTGTGAGGGAAAACCTCGAGGCATGCGAAAACCCACTGACGTTGGACCGGTCGCTGTTCATCCGCTCGCCGTACGTTTCTACCCGGGATCGAGGAGTCGCAGTCTGGGGCAACCTGCTGAACGACATGGTTCAGTACCGTGTCGACGCCATGGAAGGACGTTCCGCAACCACCGCTGCCGCAAAGGCTCCTAAATCAAGTTTCCGCTACTCGGGCCGCGCTCACGTTACGCTTCTCGATCCGGAAAACACCTACGGGTACAAAGGGACCTACATGGGCACGAAAAAGGTCCTGACCGTCGGCGGGGCCTATCAGTACGAGCCGGATGTCGCCTATTCCGACACGGTTAACCTGACTGGAGCGAAAGACTACGAAGGGTACACCGCCGACATCTTTTTCGAGTACCCGGTGGAGAAGATTGGCACGGTTACCGCGTCAGCCGCCTATGAAAAGGTGGATCTGGGGGATGCTTTCATGGGAATCAACCCCGATCCGGATGCCATCGGCCTCAACGGCGAAAAGAACGGCTACTACATCAAGGCGGGTTACATGCTGCCCAACCTGCCGCTGCAATTCTTCGGCCGGTACGAGAAGTGGTCCTTCGCCAACCTCAACGGCATTCAGAACCAGAGGATCGACTGGTACGGCGGCGGAATCAACTACTACCTCCAGGGGCAGAGCCTGAAGCTGACCTTCGAGGCGAGCCAGACCGGCTTCCACAGGGGTTCCGGCTCCGTCGCGGATGGCACAAAGGATTTCCAGACCTATGTAACGCAGCTGCAAATGATTTTCTAA
PROTEIN sequence
Length: 404
TMGKVTKLLKMLGLGAGLAMIAGTAFAGPQITFGPEEQGSLQIDYKGQFQMTVRDTGSGPNDDNSTMSFNFRRNRLALMGAYGDVISLYVQTEFLEKQDIGILTVRDTESDSEFQLLDAVMRFDLHDAFKVNVGKFKYNFVRENLEACENPLTLDRSLFIRSPYVSTRDRGVAVWGNLLNDMVQYRVDAMEGRSATTAAAKAPKSSFRYSGRAHVTLLDPENTYGYKGTYMGTKKVLTVGGAYQYEPDVAYSDTVNLTGAKDYEGYTADIFFEYPVEKIGTVTASAAYEKVDLGDAFMGINPDPDAIGLNGEKNGYYIKAGYMLPNLPLQFFGRYEKWSFANLNGIQNQRIDWYGGGINYYLQGQSLKLTFEASQTGFHRGSGSVADGTKDFQTYVTQLQMIF*