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Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

In projects: Knockout_Variovorax_02_2024_K_none_B1_day_6

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %
Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2
Displaying items 1501-1550 of 3224 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_1588
Species: Aquamicrobium defluvii (50%)
2 4533 bp 65.10 5.10 99.67
Knockout_Variovorax_02_2024_K_none_B1_day_6_3124
Species: Mesorhizobium metallidurans (50%)
2 2325 bp 67.83 4.26 97.94
Knockout_Variovorax_02_2024_K_none_B1_day_6_4660
Species: Burkholderia sp. RPE64 (50%)
2 1650 bp 64.79 6.55 98.55
Knockout_Variovorax_02_2024_K_none_B1_day_6_4916
Species: Aquamicrobium defluvii (50%)
2 1585 bp 61.26 3.60 78.74
Knockout_Variovorax_02_2024_K_none_B1_day_6_5172
Species: Micromonospora carbonacea (50%)
2 1521 bp 66.21 3.55 92.90
Knockout_Variovorax_02_2024_K_none_B1_day_6_5684
Species: Mesorhizobium sp. ORS3324 (100%)
2 1403 bp 64.50 3.74 97.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_6452
Species: Mesorhizobium loti (50%)
2 1261 bp 59.56 3.81 89.93
Knockout_Variovorax_02_2024_K_none_B1_day_6_6964
Species: marine sediment metagenome (50%)
2 1176 bp 67.26 4.85 83.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_4149
Species: Pseudomonas bauzanensis (50%)
2 1823 bp 65.50 5.84 99.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_4917
Species: Aquamicrobium defluvii (100%)
2 1585 bp 63.34 3.97 100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_5173
Species: Mesorhizobium sp. L103C131B0 (50%)
2 1521 bp 63.25 3.55 99.41
Knockout_Variovorax_02_2024_K_none_B1_day_6_5685
Species: Bosea sp. LC85 (50%)
2 1402 bp 65.34 5.14 85.81
Knockout_Variovorax_02_2024_K_none_B1_day_6_6709
Species: Agrobacterium tumefaciens (50%)
2 1217 bp 66.15 5.18 94.41
Knockout_Variovorax_02_2024_K_none_B1_day_6_7221
Species: Skermanella stibiiresistens (50%)
2 1144 bp 65.38 4.20 87.85
Knockout_Variovorax_02_2024_K_none_B1_day_6_7989
Species: Rhizobium etli (50%)
2 1051 bp 63.56 4.00 88.20
Knockout_Variovorax_02_2024_K_none_B1_day_6_9100
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1467 bp 54.87 2.45 57.87
Knockout_Variovorax_02_2024_K_none_B1_day_6_7222
Species: Aquamicrobium defluvii (50%)
2 1144 bp 64.16 3.54 84.70
Knockout_Variovorax_02_2024_K_none_B1_day_6_7478
Species: Azospirillum thiophilum (50%)
2 1112 bp 66.55 4.32 93.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_4663
Species: Mesorhizobium sp. LNHC252B00 (50%)
2 1650 bp 61.52 4.36 48.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_4919
Species: Acetonema longum (50%)
2 1582 bp 66.56 3.79 100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_5943
Species: Mesorhizobium sp. LNJC405B00 (50%)
2 1350 bp 67.56 4.11 94.89
Knockout_Variovorax_02_2024_K_none_B1_day_6_6967
Species: Mesorhizobium sp. ORS3324 (50%)
2 1176 bp 64.03 4.08 100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_7735
Species: Bosea sp. LC85 (100%)
2 1081 bp 71.32 4.72 100.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_7991
Species: Rhizobium sp. AP16 (50%)
2 1051 bp 65.84 3.28 97.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_5432
Species: Bosea sp. LC85 (50%)
2 1457 bp 60.12 4.12 65.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_6968
Species: Agrobacterium tumefaciens (100%)
2 1176 bp 64.37 3.95 98.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_7224
Species: Mesorhizobium sp. ORS3359 (50%)
2 1144 bp 67.48 4.46 99.39
Knockout_Variovorax_02_2024_K_none_B1_day_6_8248
Species: Rhizobium etli (50%)
2 1022 bp 61.55 3.23 86.89
Knockout_Variovorax_02_2024_K_none_B1_day_6_5945
Species: Brevundimonas nasdae (100%)
2 1349 bp 59.53 3.67 91.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_6201
Species: Cryptosporangium arvum (100%)
2 1304 bp 60.05 5.06 100.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_6713
Species: Afipia felis (100%)
2 1216 bp 59.87 3.21 100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_7225 2 1144 bp 63.29 2.88 93.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_8249
Species: Roseovarius nubinhibens (50%)
2 1022 bp 64.58 2.64 100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_2618
Species: Pseudomonas bauzanensis (50%)
2 2720 bp 70.22 5.46 100.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_3898
Species: Rhizobium freirei (50%)
2 1924 bp 66.74 3.82 63.77
Knockout_Variovorax_02_2024_K_none_B1_day_6_5946
Species: Rhizobium sp. CF142 (50%)
2 1349 bp 63.16 4.89 96.52
Knockout_Variovorax_02_2024_K_none_B1_day_6_6714
Species: Rhodovulum sp. PH10 (50%)
2 1216 bp 64.88 2.96 100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_7738
Species: Mesorhizobium sp. LSHC420B00 (50%)
2 1081 bp 68.73 3.33 87.14
Knockout_Variovorax_02_2024_K_none_B1_day_6_8250
Species: Mesorhizobium sp. STM 4661 (50%)
2 1022 bp 68.10 4.40 83.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_5179
Species: Caldicellulosiruptor owensensis (50%)
2 1519 bp 56.02 4.94 97.76
Knockout_Variovorax_02_2024_K_none_B1_day_6_6971
Species: Bosea sp. LC85 (50%)
2 1175 bp 69.79 3.57 83.49
Knockout_Variovorax_02_2024_K_none_B1_day_6_7483 2 1112 bp 55.67 5.80 25.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7739
Species: Mesorhizobium plurifarium (50%)
2 1081 bp 68.92 4.30 100.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_7995
Species: Acidovorax sp. NO-1 (50%)
2 1051 bp 58.90 3.43 99.05
Knockout_Variovorax_02_2024_K_none_B1_day_6_8251
Species: Azospirillum brasilense (50%)
2 1022 bp 64.09 4.11 93.93
Knockout_Variovorax_02_2024_K_none_B1_day_6_10586
Species: Celeribacter indicus (50%)
2 1503 bp 60.94 27.05 58.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_3388
Species: Xanthobacter autotrophicus (100%)
2 2154 bp 59.15 4.74 99.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_4924
Species: Mesorhizobium ciceri (50%)
2 1581 bp 65.78 4.36 90.70
Knockout_Variovorax_02_2024_K_none_B1_day_6_5436
Species: Mesorhizobium plurifarium (50%)
2 1456 bp 63.53 3.71 84.89
Knockout_Variovorax_02_2024_K_none_B1_day_6_5948
Species: Rhizobium nepotum (50%)
2 1348 bp 65.50 4.67 93.47
Displaying items 1501-1550 of 3224 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.