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Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

In projects: Knockout_Variovorax_02_2024_K_none_B1_day_6

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %
Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2
Displaying items 1651-1700 of 3224 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_5199
Species: Phyllobacterium sp. YR531 (50%)
2 1515 bp 66.40 5.05 85.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_5711
Species: Mesorhizobium loti (100%)
2 1397 bp 65.00 3.76 81.82
Knockout_Variovorax_02_2024_K_none_B1_day_6_5967
Species: Agrobacterium rhizogenes (50%)
2 1344 bp 66.07 2.68 99.78
Knockout_Variovorax_02_2024_K_none_B1_day_6_6991
Species: Aquamicrobium defluvii (50%)
2 1171 bp 67.04 4.74 90.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_7503
Species: Aurantimonas manganoxydans (100%)
2 1110 bp 66.31 5.41 97.03
Knockout_Variovorax_02_2024_K_none_B1_day_6_4944
Species: Mesorhizobium metallidurans (100%)
2 1577 bp 64.62 4.38 97.78
Knockout_Variovorax_02_2024_K_none_B1_day_6_5968
Species: CSP1_6_Rokubacteria (50%)
2 1344 bp 64.36 4.46 100.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_6224
Species: Afipia clevelandensis (50%)
2 1302 bp 65.28 4.15 94.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_6480
Species: Ralstonia pickettii (50%)
2 1256 bp 67.28 3.58 99.60
Knockout_Variovorax_02_2024_K_none_B1_day_6_7248
Species: Rhizobium sp. AP16 (50%)
2 1140 bp 63.86 4.34 95.79
Knockout_Variovorax_02_2024_K_none_B1_day_6_3921
Species: Maritimibacter alkaliphilus (50%)
2 1915 bp 64.75 2.98 48.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_5457
Species: Mesorhizobium amorphae (50%)
2 1451 bp 67.61 3.82 95.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_5713
Species: Mesorhizobium metallidurans (100%)
2 1396 bp 67.41 4.08 97.99
Knockout_Variovorax_02_2024_K_none_B1_day_6_8273
Species: Gemmatimonas aurantiaca (50%)
2 1020 bp 66.37 5.15 89.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_3666
Species: Hoeflea phototrophica (50%)
2 2021 bp 64.18 6.16 100.05
Knockout_Variovorax_02_2024_K_none_B1_day_6_4434
Species: Alicycliphilus sp. B1 (50%)
2 1721 bp 64.44 6.45 87.68
Knockout_Variovorax_02_2024_K_none_B1_day_6_4946
Species: Mesorhizobium sp. LNHC221B00 (50%)
2 1577 bp 67.47 3.80 100.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_7506
Species: uncultured bacterium pTW2 (50%)
2 1109 bp 70.87 5.14 95.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_7762
Species: Sinorhizobium meliloti (50%)
2 1078 bp 64.10 3.20 62.89
Knockout_Variovorax_02_2024_K_none_B1_day_6_8274
Species: Pandoraea sp. RB-44 (50%)
2 1020 bp 66.67 5.74 99.12
Knockout_Variovorax_02_2024_K_none_B1_day_6_2899
Species: Rhizobium sp. PDO1-076 (50%)
2 2483 bp 59.77 9.36 88.20
Knockout_Variovorax_02_2024_K_none_B1_day_6_3667
Species: Advenella kashmirensis (50%)
2 2020 bp 69.46 12.33 98.91
Knockout_Variovorax_02_2024_K_none_B1_day_6_4691
Species: Mesorhizobium sp. ORS3324 (50%)
2 1640 bp 65.18 4.30 83.96
Knockout_Variovorax_02_2024_K_none_B1_day_6_5459
Species: Pseudomonas mendocina (50%)
2 1451 bp 60.44 3.51 92.63
Knockout_Variovorax_02_2024_K_none_B1_day_6_6483
Species: Polaromonas naphthalenivorans (50%)
2 1256 bp 74.84 4.18 99.60
Knockout_Variovorax_02_2024_K_none_B1_day_6_7251
Species: Clostridium sp. ATCC 29733 (50%)
2 1140 bp 61.49 5.00 96.32
Knockout_Variovorax_02_2024_K_none_B1_day_6_3156
Species: Dechloromonas aromatica (50%)
2 2303 bp 66.78 5.28 76.20
Knockout_Variovorax_02_2024_K_none_B1_day_6_4692
Species: Mesorhizobium amorphae (50%)
2 1640 bp 68.41 4.39 99.88
Knockout_Variovorax_02_2024_K_none_B1_day_6_5716
Species: Mesorhizobium ciceri (50%)
2 1396 bp 63.11 4.19 89.83
Knockout_Variovorax_02_2024_K_none_B1_day_6_6228
Species: Desulfotomaculum reducens (50%)
2 1301 bp 64.87 4.15 100.54
Knockout_Variovorax_02_2024_K_none_B1_day_6_6484
Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)
2 1256 bp 64.49 5.37 99.60
Knockout_Variovorax_02_2024_K_none_B1_day_6_6996
Species: Microvirga aerilata (100%)
2 1171 bp 61.49 4.36 100.17
Knockout_Variovorax_02_2024_K_none_B1_day_6_7252
Species: Ochrobactrum anthropi (50%)
2 1139 bp 70.32 4.35 100.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_7508
Species: Mesorhizobium sp. ORS3359 (50%)
2 1109 bp 65.46 4.46 92.79
Knockout_Variovorax_02_2024_K_none_B1_day_6_7764
Species: Devosia limi (100%)
2 1078 bp 68.55 6.96 91.84
Knockout_Variovorax_02_2024_K_none_B1_day_6_4181
Species: Mesorhizobium huakuii (50%)
2 1812 bp 62.80 3.97 97.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_5973
Species: Nitratireductor indicus (50%)
2 1344 bp 62.80 7.92 93.97
Knockout_Variovorax_02_2024_K_none_B1_day_6_6229
Species: Burkholderia sp. BT03 (100%)
2 1301 bp 65.87 3.80 97.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_6741
Species: Brevundimonas nasdae (50%)
2 1211 bp 65.40 4.21 99.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_7509
Species: Mesorhizobium sp. ORS3324 (50%)
2 1109 bp 64.65 3.38 98.74
Knockout_Variovorax_02_2024_K_none_B1_day_6_7765
Species: Nitratireductor indicus (50%)
2 1078 bp 62.99 6.40 95.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_8021
Species: Neorhizobium galegae (50%)
2 1047 bp 67.72 2.72 85.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_5206
Species: RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated (50%)
2 1514 bp 64.07 3.76 94.32
Knockout_Variovorax_02_2024_K_none_B1_day_6_5462
Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)
2 1449 bp 68.81 5.28 86.54
Knockout_Variovorax_02_2024_K_none_B1_day_6_7254
Species: Brucella abortus (50%)
2 1139 bp 65.76 4.61 98.24
Knockout_Variovorax_02_2024_K_none_B1_day_6_3671
Species: Bosea sp. LC85 (50%)
2 2019 bp 65.73 3.57 99.85
Knockout_Variovorax_02_2024_K_none_B1_day_6_4439
Species: GWF1_Xanthomonadales_69_6_curated (100%)
2 1719 bp 67.60 8.73 77.14
Knockout_Variovorax_02_2024_K_none_B1_day_6_4695
Species: Novosphingobium lindaniclasticum (50%)
2 1639 bp 66.38 4.12 81.64
Knockout_Variovorax_02_2024_K_none_B1_day_6_4951
Species: Bosea sp. LC85 (50%)
2 1576 bp 63.32 4.00 91.56
Knockout_Variovorax_02_2024_K_none_B1_day_6_5207
Species: Conexibacter woesei (100%)
2 1513 bp 62.92 5.35 99.93
Displaying items 1651-1700 of 3224 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.