ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 2451-2500 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_7652	2	1092 bp	63.37	6.18	92.03
Knockout_Variovorax_02_2024_K_none_B1_day_6_7908 Species: Rhizobium sp. YS-1r (50%)	2	1060 bp	69.62	5.24	100.19
Knockout_Variovorax_02_2024_K_none_B1_day_6_5349 Species: Mesorhizobium sp. ORS3324 (50%)	2	1482 bp	67.54	4.05	86.64
Knockout_Variovorax_02_2024_K_none_B1_day_6_5605 Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)	2	1420 bp	70.63	5.92	102.25
Knockout_Variovorax_02_2024_K_none_B1_day_6_6117 Species: Bosea sp. LC85 (100%)	2	1320 bp	71.89	3.86	91.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_7653 Species: Ochrobactrum anthropi (50%)	2	1092 bp	70.97	4.12	87.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7909 Species: Bradyrhizobium sp. YR681 (50%)	2	1060 bp	64.72	3.68	88.58
Knockout_Variovorax_02_2024_K_none_B1_day_6_3558 Species: bacterium YEK0313 (50%)	2	2063 bp	56.76	4.07	81.58
Knockout_Variovorax_02_2024_K_none_B1_day_6_6374 Species: Methylobacterium aquaticum (50%)	2	1277 bp	63.19	4.23	84.81
Knockout_Variovorax_02_2024_K_none_B1_day_6_7654 Species: Bosea sp. LC85 (50%)	2	1091 bp	66.18	4.95	96.52
Knockout_Variovorax_02_2024_K_none_B1_day_6_8166	2	1031 bp	59.26	5.38	41.61
Knockout_Variovorax_02_2024_K_none_B1_day_6_8422 Species: Kineococcus radiotolerans (50%)	2	1007 bp	68.22	4.62	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_4327 Species: Brucella suis (50%)	2	1759 bp	66.23	6.14	83.23
Knockout_Variovorax_02_2024_K_none_B1_day_6_4583 Species: Mesorhizobium sp. L2C054A000 (50%)	2	1670 bp	65.09	4.49	91.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_5863 Species: Mesorhizobium loti (100%)	2	1367 bp	64.89	3.73	98.98
Knockout_Variovorax_02_2024_K_none_B1_day_6_6631 Species: Nitratireductor indicus (50%)	2	1230 bp	52.44	4.39	66.59
Knockout_Variovorax_02_2024_K_none_B1_day_6_7911	2	1060 bp	59.15	2.55	66.51
Knockout_Variovorax_02_2024_K_none_B1_day_6_3560 Species: marine sediment metagenome (50%)	2	2062 bp	66.97	4.22	99.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_4840 Species: Ochrobactrum intermedium (50%)	2	1606 bp	60.02	3.36	50.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_5608 Species: Bosea sp. LC85 (100%)	2	1419 bp	69.77	4.23	97.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_6888 Species: Mesorhizobium opportunistum (50%)	2	1187 bp	67.31	4.30	91.74
Knockout_Variovorax_02_2024_K_none_B1_day_6_7656 Species: Mesorhizobium sp. SOD10 (50%)	2	1091 bp	63.52	4.26	99.82
Knockout_Variovorax_02_2024_K_none_B1_day_6_4585 Species: RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated (50%)	2	1670 bp	69.88	5.39	97.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_4841 Species: Mesorhizobium sp. LSHC420B00 (50%)	2	1605 bp	52.83	4.30	97.01
Knockout_Variovorax_02_2024_K_none_B1_day_6_5353	2	1480 bp	62.03	4.46	94.66
Knockout_Variovorax_02_2024_K_none_B1_day_6_6890 Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)	2	1187 bp	68.66	5.31	96.80
Knockout_Variovorax_02_2024_K_none_B1_day_6_7402 Species: RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated (50%)	2	1121 bp	64.76	4.95	89.12
Knockout_Variovorax_02_2024_K_none_B1_day_6_7658 Species: Acidovorax ebreus (50%)	2	1091 bp	64.62	5.22	93.03
Knockout_Variovorax_02_2024_K_none_B1_day_6_8170 Species: Bosea sp. LC85 (50%)	2	1030 bp	66.41	3.50	51.84
Knockout_Variovorax_02_2024_K_none_B1_day_6_8426 Species: Rhizobium freirei (50%)	2	1006 bp	61.43	5.07	78.73
Knockout_Variovorax_02_2024_K_none_B1_day_6_5867 Species: Thauera sp. SWB20 (50%)	2	1365 bp	73.26	5.05	89.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_6123 Species: CG_Rhodof_04 (50%)	2	1319 bp	70.20	9.10	90.98
Knockout_Variovorax_02_2024_K_none_B1_day_6_6635 Species: Pseudomonas bauzanensis (50%)	2	1228 bp	66.12	4.89	88.93
Knockout_Variovorax_02_2024_K_none_B1_day_6_7915 Species: Methylobacterium sp. GXF4 (50%)	2	1059 bp	63.74	3.68	96.32
Knockout_Variovorax_02_2024_K_none_B1_day_6_3052 Species: Bradyrhizobium sp. BTAi1 (100%)	2	2366 bp	64.92	7.86	99.92
Knockout_Variovorax_02_2024_K_none_B1_day_6_6892 Species: Mesorhizobium plurifarium (50%)	2	1186 bp	65.01	4.17	97.89
Knockout_Variovorax_02_2024_K_none_B1_day_6_7660 Species: Pseudomonas sp. GM60 (50%)	2	1091 bp	60.49	4.12	93.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_8428 Species: Bosea sp. LC85 (100%)	2	1006 bp	66.70	4.77	75.75
Knockout_Variovorax_02_2024_K_none_B1_day_6_5101 Species: Mesorhizobium sp. SOD10 (50%)	2	1537 bp	61.29	4.00	84.12
Knockout_Variovorax_02_2024_K_none_B1_day_6_5869 Species: Mesorhizobium sp. LNHC221B00 (50%)	2	1365 bp	63.22	4.18	80.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_7149 Species: Ensifer adhaerens (50%)	2	1152 bp	62.33	5.73	88.02
Knockout_Variovorax_02_2024_K_none_B1_day_6_8173 Species: Bosea sp. LC85 (50%)	2	1030 bp	68.16	5.24	94.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_3310 Species: Aquamicrobium defluvii (50%)	2	2209 bp	65.91	6.52	98.19
Knockout_Variovorax_02_2024_K_none_B1_day_6_4590	2	1669 bp	61.35	3.95	82.50
Knockout_Variovorax_02_2024_K_none_B1_day_6_5102 Species: Mesorhizobium huakuii (50%)	2	1537 bp	63.70	4.20	93.49
Knockout_Variovorax_02_2024_K_none_B1_day_6_6638 Species: Acetobacteraceae bacterium AT-5844 (50%)	2	1228 bp	61.48	2.57	95.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_8174 Species: Pseudomonas bauzanensis (50%)	2	1030 bp	67.57	5.68	99.61
Knockout_Variovorax_02_2024_K_none_B1_day_6_8430 Species: Acidovorax temperans (50%)	2	1006 bp	68.69	5.52	100.20
Knockout_Variovorax_02_2024_K_none_B1_day_6_3055 Species: Halomonas sp. A3H3 (50%)	2	2365 bp	56.32	11.16	54.04
Knockout_Variovorax_02_2024_K_none_B1_day_6_3311 Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)	2	2208 bp	72.46	7.07	96.33

Displaying items 2451-2500 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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