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Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

In projects: Knockout_Variovorax_02_2024_K_none_B1_day_6

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %
Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2
Displaying items 2501-2550 of 3224 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_7484
Species: Bosea sp. LC85 (66.67%)
3 1112 bp 66.19 4.32 99.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_4187
Genus: Pseudomonas (66.67%)
3 1810 bp 65.36 8.20 99.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_2207
Genus: Bradyrhizobium (66.67%)
3 3206 bp 60.92 5.66 99.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_2456
Class: Deltaproteobacteria (50%)
4 2882 bp 59.68 4.63 99.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_2123
Species: Pseudomonas bauzanensis (100%)
3 3347 bp 65.61 5.20 99.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_4828
Species: Burkholderia pseudomallei (100%)
2 1610 bp 67.20 5.96 99.32
Knockout_Variovorax_02_2024_K_none_B1_day_6_4738
Species: Bradyrhizobium sp. LTSPM299 (50%)
2 1628 bp 67.38 4.88 99.32
Knockout_Variovorax_02_2024_K_none_B1_day_6_6853
Genus: Mesorhizobium (66.67%)
3 1193 bp 63.03 3.90 99.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_5307
Species: Mesorhizobium ciceri (66.67%)
3 1492 bp 67.76 4.22 99.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_4654
Species: Bradyrhizobium sp. BTAi1 (50%)
2 1652 bp 70.88 8.44 99.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_6741
Species: Brevundimonas nasdae (50%)
2 1211 bp 65.40 4.21 99.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_3709
Species: Sphingobium ummariense (50%)
2 2002 bp 61.94 5.09 99.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_6560
Species: Bradyrhizobium elkanii (50%)
2 1241 bp 63.17 3.14 99.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_7691
Species: Magnetospirillum gryphiswaldense (50%)
2 1087 bp 66.42 3.59 99.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_6528
Species: Mesorhizobium plurifarium (50%)
2 1247 bp 61.35 3.61 99.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_1893
Phylum: Proteobacteria (66.67%)
6 3768 bp 64.73 6.41 99.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_7556
Species: Mesorhizobium sp. L2C084A000 (50%)
2 1102 bp 65.79 4.36 99.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_3560
Species: marine sediment metagenome (50%)
2 2062 bp 66.97 4.22 99.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_7489
Species: Pantoea rodasii (50%)
2 1111 bp 64.63 4.19 99.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_7497
Species: Thioclava pacifica (50%)
2 1111 bp 60.94 5.13 99.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_3521
Order: Burkholderiales (66.67%)
3 2074 bp 64.71 3.91 99.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_4862
Order: Burkholderiales (66.67%)
3 1597 bp 65.75 14.37 99.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_7381
Species: Agrobacterium arsenijevicii (50%)
2 1123 bp 66.96 3.47 99.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_5476
Species: Shinella sp. DD12 (50%)
2 1446 bp 64.11 5.39 99.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_4291
Species: Pseudomonas bauzanensis (75%)
4 1775 bp 66.03 4.65 99.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_7297
Species: Rhizobium leguminosarum (50%)
2 1135 bp 62.11 5.55 99.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_4742
Species: Devosia epidermidihirudinis (50%)
2 1627 bp 65.89 4.79 99.39
Knockout_Variovorax_02_2024_K_none_B1_day_6_7224
Species: Mesorhizobium sp. ORS3359 (50%)
2 1144 bp 67.48 4.46 99.39
Knockout_Variovorax_02_2024_K_none_B1_day_6_4149
Species: Pseudomonas bauzanensis (50%)
2 1823 bp 65.50 5.84 99.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_8468
Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (100%)
1 1002 bp 70.26 4.19 99.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_5173
Species: Mesorhizobium sp. L103C131B0 (50%)
2 1521 bp 63.25 3.55 99.41
Knockout_Variovorax_02_2024_K_none_B1_day_6_8204
Species: Pusillimonas sp. T7-7 (50%)
2 1026 bp 59.55 6.58 99.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_6817 3 1198 bp 72.12 5.01 99.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_1114
Class: Gammaproteobacteria (57.14%)
7 7139 bp 51.13 6.91 99.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_5712 3 1397 bp 61.63 4.08 99.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_6626
Species: Bosea sp. LC85 (100%)
1 1231 bp 66.61 4.87 99.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_5637
Species: uncultured bacterium (50%)
2 1412 bp 67.56 6.27 99.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_7899
Species: Mesorhizobium sp. LSJC280B00 (50%)
2 1062 bp 66.20 3.53 99.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_4833
Class: Gammaproteobacteria (66.67%)
3 1608 bp 72.08 5.41 99.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_7698
Species: Mesorhizobium sp. SOD10 (50%)
2 1086 bp 68.97 4.42 99.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_7416
Species: Aquamicrobium defluvii (50%)
2 1119 bp 66.58 4.16 99.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_3249
Species: Pseudomonas putida (50%)
2 2253 bp 69.91 6.39 99.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_4008
Species: RifCSPlowO2_12_Pseudomonas_60_38_curated (50%)
2 1879 bp 65.19 7.03 99.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_4000
Species: Thioclava dalianensis (100%)
3 1882 bp 64.45 5.10 99.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_7278
Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)
2 1137 bp 71.59 4.49 99.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_5053
Species: Mesorhizobium loti (50%)
2 1550 bp 67.42 3.58 99.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_2580
Species: Pseudomonas sp. GM67 (50%)
4 2753 bp 56.99 7.08 99.49
Knockout_Variovorax_02_2024_K_none_B1_day_6_1636
Order: Rhizobiales (83.33%)
6 4396 bp 57.05 4.98 99.50
Knockout_Variovorax_02_2024_K_none_B1_day_6_4129
Species: Mesorhizobium sp. ORS3359 (66.67%)
3 1830 bp 63.06 4.10 99.51
Knockout_Variovorax_02_2024_K_none_B1_day_6_2053
Order: Burkholderiales (50%)
4 3461 bp 62.87 5.63 99.51
Displaying items 2501-2550 of 3224 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.