ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 3001-3050 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_2006 Phylum: Proteobacteria (100%)	3	3544 bp	62.05	6.48	100.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_4566 Species: Aquamicrobium defluvii (50%)	2	1673 bp	70.11	5.92	100.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_4650 Species: Nitratireductor indicus (100%)	2	1655 bp	66.77	3.99	100.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_4946 Species: Mesorhizobium sp. LNHC221B00 (50%)	2	1577 bp	67.47	3.80	100.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_5284 Species: Mesorhizobium australicum (50%)	2	1496 bp	67.18	3.51	100.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_5330 Species: Bordetella bronchiseptica (50%)	2	1487 bp	67.79	9.38	100.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_5442 Species: Celeribacter indicus (100%)	2	1454 bp	64.72	6.19	100.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_5860 Species: Mesorhizobium sp. SOD10 (50%)	2	1367 bp	68.32	4.39	100.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_6041 Species: Bosea sp. LC85 (100%)	2	1334 bp	64.09	3.15	100.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_6182 Species: Bosea sp. LC85 (50%)	2	1307 bp	70.85	4.59	100.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_6201 Species: Cryptosporangium arvum (100%)	2	1304 bp	60.05	5.06	100.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_6429 Species: Shinella sp. DD12 (50%)	2	1265 bp	67.98	5.93	100.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_6579 Species: Celeribacter indicus (50%)	2	1238 bp	66.24	5.57	100.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_6952 Species: Bosea sp. LC85 (100%)	2	1178 bp	70.37	5.09	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_6984 Species: Bosea sp. LC85 (100%)	2	1172 bp	66.47	3.58	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_6990 Species: Nitratireductor pacificus (50%)	2	1172 bp	69.20	5.50	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7032 Species: Bosea sp. LC85 (100%)	2	1166 bp	67.24	3.86	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7112 Species: Bosea sp. LC85 (50%)	2	1157 bp	67.07	3.89	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_3182 Species: Afipia sp. 1NLS2 (50%)	2	2290 bp	63.28	4.91	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7289 Species: Bosea sp. LC85 (100%)	2	1136 bp	71.74	3.70	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_3241 Species: Rhodobacter sphaeroides (100%)	2	2257 bp	64.47	4.52	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7375 Species: Mesorhizobium ciceri (50%)	2	1124 bp	65.12	4.27	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7450 Species: Methylobacterium mesophilicum (50%)	2	1115 bp	67.09	4.04	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7847 Species: Beijerinckia indica (50%)	2	1070 bp	63.74	2.80	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_8056 Species: Bosea sp. LC85 (100%)	2	1043 bp	69.13	7.33	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_8249 Species: Roseovarius nubinhibens (50%)	2	1022 bp	64.58	2.64	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_8283 Species: Bosea sp. LC85 (100%)	2	1019 bp	63.98	3.53	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_8353 Species: Rhizobium sp. YS-1r (50%)	2	1013 bp	67.72	4.59	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_8422 Species: Kineococcus radiotolerans (50%)	2	1007 bp	68.22	4.62	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_8485 Species: Nocardioides sp. CF8 (50%)	2	1001 bp	66.33	5.39	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_4706 Species: Rhizobium freirei (50%)	2	1636 bp	66.32	5.04	100.12
Knockout_Variovorax_02_2024_K_none_B1_day_6_4785 Species: Mesorhizobium sp. ORS3359 (100%)	2	1618 bp	71.76	4.08	100.12
Knockout_Variovorax_02_2024_K_none_B1_day_6_4850 Species: Aquamicrobium defluvii (100%)	2	1603 bp	70.43	5.24	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_4917 Species: Aquamicrobium defluvii (100%)	2	1585 bp	63.34	3.97	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_4919 Species: Acetonema longum (50%)	2	1582 bp	66.56	3.79	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_8092 Species: Mesorhizobium plurifarium (50%)	2	1582 bp	69.79	4.36	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_3185 Species: Roseivivax isoporae (50%)	2	2289 bp	64.31	4.59	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_5165 Species: Thauera sp. 27 (50%)	2	1522 bp	64.13	3.25	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_3211 Species: Aquamicrobium defluvii (50%)	4	2277 bp	67.11	5.73	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_5374 Species: Agrobacterium albertimagni (50%)	2	1474 bp	64.86	5.70	100.14
Knockout_Variovorax_02_2024_K_none_B1_day_6_5525 Species: Mesorhizobium ciceri (50%)	2	1438 bp	65.65	4.07	100.14
Knockout_Variovorax_02_2024_K_none_B1_day_6_5578 Species: Rhodobacteraceae bacterium PD-2 (50%)	2	1426 bp	67.60	3.68	100.14
Knockout_Variovorax_02_2024_K_none_B1_day_6_3575 Species: Sanguibacter keddieii (50%)	2	2055 bp	73.14	9.27	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_5881 Species: Bradyrhizobium japonicum (50%)	2	1363 bp	53.26	4.40	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6022 Species: Rhizobium sp. Pop5 (50%)	2	1336 bp	68.56	5.39	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6045 Species: Thermincola potens (50%)	2	1333 bp	67.44	4.73	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6057 Species: Mesorhizobium amorphae (50%)	2	1330 bp	71.05	3.83	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6065 Species: Bosea sp. LC85 (100%)	2	1330 bp	65.64	3.16	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6211 Species: Conexibacter woesei (100%)	2	1303 bp	66.23	4.14	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_3884 Species: Neorhizobium galegae (50%)	2	1932 bp	68.58	5.12	100.16

Displaying items 3001-3050 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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