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ACD72_73_4

Organism: ACD72

megabin RP 44 / 55 MC: 27 BSCG 44 / 51 MC: 25 ASCG 0 / 38
Location: comp(3752..4357)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 41.0
  • Coverage: 183.0
  • Bit_score: 132
  • Evalue 1.60e-28
seg (db=Seg db_id=seg from=189 to=199) iprscan interpro
DB: Seg
  • Identity: null
  • Coverage: null
  • Bit_score: null
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=21 to=178 evalue=2.4e-42 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 2.40e-42

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Taxonomy

R_RIF_OD1_02_44_13 → RIF-OD1-2 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 606
ATGACAACTGATAAAATCACTGACGAAGATTTGATCGTTATAATTCGCGAAAAAGACAAGGAGATGTATGCCGAAATCATTCGCCGTTATCAACGCAAGTTAAGTCATTATTTGAGAAAGTTTATTCGAAGCCACGACGAACTTGAAGATGTGCTTCAGGAAGTTTTTGTTAAAACATATCGTAACTTAAATTCATTCGATACTGATAAAAAGTTTTCATCCTGGATTTATCGTATAGCACACAACGAGGCGCTCAATCATTTGAAAAAAAATAAAAACTCTATTTCTTTGGACGAACATGAATTTGATATCGTCGATGAAAATTTTGACATCAAATCAAAGATTGATATCAAAATTGTTAGACAGAAAATCGAACAGGCATTTTCGCAAATGGATGAAAAGTATCGCGAACCTATATTTCTATATTTTTTTGAACAAAAATCCTACGATGAGATCAGTGAAATTTTGCATATACCTTGTAGTACGGTCGGAGTGTTAATAATGCGTGGTAAAAGTATTGTCAAAAAAATTTTAGAACAACAACATAAAATATATGACTCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATATAA
PROTEIN sequence
Length: 202
MTTDKITDEDLIVIIREKDKEMYAEIIRRYQRKLSHYLRKFIRSHDELEDVLQEVFVKTYRNLNSFDTDKKFSSWIYRIAHNEALNHLKKNKNSISLDEHEFDIVDENFDIKSKIDIKIVRQKIEQAFSQMDEKYREPIFLYFFEQKSYDEISEILHIPCSTVGVLIMRGKSIVKKILEQQHKIYDSKXXXXXXXXXXXXI*