ggKbase home page

gwc2_scaffold_137_27 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
30S ribosomal protein S4 similarity KEGG
DB: KEGG
53.6 207.0 218 2.30e-54 toc:Toce_0146
30S ribosomal protein S4 n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RZN9_THEOJ similarity UNIREF
DB: UNIREF90
53.0 0.0 217 3.00e+00 toc:Toce_0146
30S RIBOSOMAL PROTEIN S4P (db=HMMPanther db_id=PTHR11831:SF4 from=98 to=135 evalue=7.1e-07) iprscan interpro
DB: HMMPanther
0.0 0.0 0 7.00e+00 toc:Toce_0146
30S 40S RIBOSOMAL PROTEIN (db=HMMPanther db_id=PTHR11831 from=98 to=135 evalue=7.1e-07 interpro_id=IPR022801 interpro_description=Ribosomal protein S4/S9) iprscan interpro
DB: HMMPanther
0.0 0.0 0 7.00e+00 toc:Toce_0146
(db=HMMPfam db_id=PF00163 from=6 to=101 evalue=6.7e-16 interpro_id=IPR001912 interpro_description=Ribosomal protein S4/S9, N-terminal GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 6.00e+00 toc:Toce_0146
(db=HMMPfam db_id=PF01479 from=103 to=147 evalue=4.6e-16 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 4.00e+00 toc:Toce_0146
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=3 to=210 evalue=9.5e-57) iprscan interpro
DB: superfamily
0.0 0.0 0 9.00e+00 toc:Toce_0146
S4 (db=ProfileScan db_id=PS50889 from=102 to=179 evalue=13.957 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
0.0 0.0 0 1.30e+01 toc:Toce_0146
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=100 to=124 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843)) iprscan interpro
DB: PatternScan
0.0 0.0 0 0.0 toc:Toce_0146
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=6 to=210 evalue=3.0e-72 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935)) iprscan interpro
DB: HMMTigr
0.0 0.0 0 3.00e+00 toc:Toce_0146
no description (db=Gene3D db_id=G3DSA:1.10.1050.10 from=1 to=115 evalue=2.2e-33 interpro_id=IPR001912 interpro_description=Ribosomal protein S4/S9, N-terminal GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843)) iprscan interpro
DB: Gene3D
0.0 0.0 0 2.00e+00 toc:Toce_0146
no description (db=HMMSmart db_id=SM00363 from=102 to=163 evalue=3.7e-14 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMSmart
0.0 0.0 0 3.00e+00 toc:Toce_0146
30S ribosomal protein S4, small subunit ribosomal protein S4 {ECO:0000313|EMBL:KKR06839.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14. UNIPROT
DB: UniProtKB
100.0 210.0 425 6.20e-116 A0A0G0MS68_9BACT
  • SCG Annotations
  • BSCG ribosomal protein S4