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NECEvent2014_2_8_UNK

In projects: NECEvent2014_2_8
Displaying items 51-100 of 129 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_2_8_scaffold_1566 172_008_scaffold_1566
Species: Eggerthella lenta (66.67%)
3 1962 bp 56.98 3.67 80.58
NECEvent2014_2_8_scaffold_2443 172_008_scaffold_2443
Species: Enterococcus faecium (100%)
1 1466 bp 39.15 29.57 81.04
NECEvent2014_2_8_scaffold_1707 172_008_scaffold_1707 6 1848 bp 56.49 4.46 81.17
NECEvent2014_2_8_scaffold_3887 172_008_scaffold_3887 4 1069 bp 39.57 4.91 81.95
NECEvent2014_2_8_scaffold_2111 172_008_scaffold_2111
Species: [Clostridium] methylpentosum (50%)
2 1607 bp 36.53 9.89 82.14
NECEvent2014_2_8_scaffold_591 172_008_scaffold_591
Species: human gut metagenome (100%)
3 4138 bp 31.25 8.70 82.72
NECEvent2014_2_8_scaffold_3268 172_008_scaffold_3268
Species: Salmonella enterica (100%)
1 1207 bp 48.14 1276.68 83.26
NECEvent2014_2_8_scaffold_278 172_008_scaffold_278
Species: Peptoclostridium difficile (90%)
10 8384 bp 38.38 9.77 84.66
NECEvent2014_2_8_scaffold_3836 172_008_scaffold_3836
Species: Eggerthella sp. HGA1 (100%)
2 1077 bp 54.78 5.29 84.96
NECEvent2014_2_8_scaffold_409 172_008_scaffold_409
Species: Peptoclostridium difficile (81.82%)
11 5540 bp 29.57 5.33 85.29
NECEvent2014_2_8_scaffold_3136 172_008_scaffold_3136
Species: [Ruminococcus] torques (100%)
1 1240 bp 40.40 17.78 85.89
NECEvent2014_2_8_scaffold_503 172_008_scaffold_503
Species: Peptoclostridium difficile (75%)
8 4738 bp 42.99 13.77 86.81
NECEvent2014_2_8_scaffold_3272 172_008_scaffold_3272
Species: Lactobacillus amylovorus (100%)
1 1206 bp 42.79 49.38 87.31
NECEvent2014_2_8_scaffold_3457 172_008_scaffold_3457
Domain: Bacteria (100%)
3 1160 bp 55.00 3.88 87.41
NECEvent2014_2_8_scaffold_621 172_008_scaffold_621
Species: Peptoclostridium difficile (100%)
4 3970 bp 36.68 9.86 88.04
NECEvent2014_2_8_scaffold_436 172_008_scaffold_436
Order: Enterobacteriales (100%)
5 5326 bp 41.01 28.59 88.32
NECEvent2014_2_8_scaffold_4229 172_008_scaffold_4229
Species: Peptoclostridium difficile (50%)
2 1002 bp 41.52 3.59 88.32
NECEvent2014_2_8_scaffold_1153 172_008_scaffold_1153
Order: Erysipelotrichales (50%)
6 2453 bp 37.63 21.89 88.91
NECEvent2014_2_8_scaffold_1295 172_008_scaffold_1295
Species: Actinomyces viscosus (50%)
2 2248 bp 48.75 3.60 89.15
NECEvent2014_2_8_scaffold_1558 172_008_scaffold_1558
Phylum: Firmicutes (66.67%)
3 1966 bp 46.59 4.12 89.42
NECEvent2014_2_8_scaffold_1043 172_008_scaffold_1043
Species: Peptoclostridium difficile (100%)
4 2592 bp 42.32 11.00 89.47
NECEvent2014_2_8_scaffold_2643 172_008_scaffold_2643
Species: Eggerthella sp. HGA1 (66.67%)
3 1393 bp 58.00 4.31 89.59
NECEvent2014_2_8_scaffold_3125 172_008_scaffold_3125
Species: Enterococcus faecalis (100%)
1 1243 bp 45.70 6.64 89.78
NECEvent2014_2_8_scaffold_559 172_008_scaffold_559
Order: Clostridiales (50%)
6 4341 bp 40.08 10.12 89.91
NECEvent2014_2_8_scaffold_2121 172_008_scaffold_2121
Species: Eggerthella lenta (100%)
2 1602 bp 52.75 3.28 90.64
NECEvent2014_2_8_scaffold_4005 172_008_scaffold_4005
Species: Enterococcus faecium (100%)
1 1044 bp 37.64 45.40 90.80
NECEvent2014_2_8_scaffold_1672 172_008_scaffold_1672 3 1875 bp 39.57 12.72 91.04
NECEvent2014_2_8_scaffold_2837 172_008_scaffold_2837
Species: Peptoclostridium difficile (100%)
1 1331 bp 37.94 11.95 91.51
NECEvent2014_2_8_scaffold_1958 172_008_scaffold_1958
Order: Clostridiales (66.67%)
3 1695 bp 49.20 3.01 91.68
NECEvent2014_2_8_scaffold_4098 172_008_scaffold_4098 4 1024 bp 38.28 4.10 91.80
NECEvent2014_2_8_scaffold_1215 172_008_scaffold_1215
Species: [Clostridium] spiroforme (50%)
2 2359 bp 23.10 7.50 91.82
NECEvent2014_2_8_scaffold_4027 172_008_scaffold_4027
Species: Peptoclostridium difficile (66.67%)
3 1039 bp 41.19 17.76 91.82
NECEvent2014_2_8_scaffold_502 172_008_scaffold_502
Species: human gut metagenome (50%)
6 4765 bp 31.02 7.30 91.84
NECEvent2014_2_8_scaffold_2644 172_008_scaffold_2644 4 1393 bp 54.77 3.98 92.82
NECEvent2014_2_8_scaffold_817 172_008_scaffold_817
Genus: Lachnoclostridium (66.67%)
3 3130 bp 51.60 3.83 93.35
NECEvent2014_2_8_scaffold_3728 172_008_scaffold_3728
Species: Coprobacillus sp. 29_1 (100%)
1 1096 bp 46.08 6.71 93.89
NECEvent2014_2_8_scaffold_3730 172_008_scaffold_3730
Species: Peptoclostridium difficile (100%)
1 1096 bp 46.72 11.22 93.89
NECEvent2014_2_8_scaffold_1415 172_008_scaffold_1415
Genus: Eggerthella (66.67%)
3 2104 bp 48.91 4.28 94.39
NECEvent2014_2_8_scaffold_3732 172_008_scaffold_3732
Species: Shigella flexneri (50%)
2 1096 bp 50.64 1422.67 94.71
NECEvent2014_2_8_scaffold_1695 172_008_scaffold_1695
Species: Peptoclostridium difficile (50%)
2 1859 bp 46.15 10.57 94.73
NECEvent2014_2_8_scaffold_3691 172_008_scaffold_3691
Species: Staphylococcus epidermidis (100%)
1 1105 bp 36.29 3.26 95.57
NECEvent2014_2_8_scaffold_651 172_008_scaffold_651
Phylum: Actinobacteria (50%)
4 3780 bp 50.53 3.89 95.79
NECEvent2014_2_8_scaffold_372 172_008_scaffold_372
Phylum: Firmicutes (80%)
5 6008 bp 30.78 9.39 96.32
NECEvent2014_2_8_scaffold_383 172_008_scaffold_383
Domain: Bacteria (85.71%)
7 5911 bp 32.79 7.82 96.48
NECEvent2014_2_8_scaffold_1925 172_008_scaffold_1925
Species: Adlercreutzia equolifaciens (100%)
1 1710 bp 51.52 4.91 96.49
NECEvent2014_2_8_scaffold_2283 172_008_scaffold_2283
Species: Hungatella hathewayi (100%)
1 1529 bp 49.12 4.32 96.53
NECEvent2014_2_8_scaffold_3564 172_008_scaffold_3564
Species: [Clostridium] innocuum (50%)
2 1135 bp 42.11 2.91 96.74
NECEvent2014_2_8_scaffold_606 172_008_scaffold_606
Order: Clostridiales (80%)
5 4053 bp 44.81 3.85 96.74
NECEvent2014_2_8_scaffold_2117 172_008_scaffold_2117
Species: Peptoclostridium difficile (100%)
1 1604 bp 36.53 6.92 97.26
NECEvent2014_2_8_scaffold_2696 172_008_scaffold_2696
Species: Peptoclostridium difficile (100%)
1 1370 bp 36.28 6.79 97.88
Displaying items 51-100 of 129 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.