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NECEvent2014_2_8_UNK

In projects: NECEvent2014_2_8
Displaying items 101-129 of 129 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_2_8_scaffold_1701 172_008_scaffold_1701
Species: Blautia sp. KLE 1732 (50%)
2 1852 bp 41.47 3.64 99.14
NECEvent2014_2_8_scaffold_2593 172_008_scaffold_2593
Species: Eggerthella sp. HGA1 (66.67%)
3 1414 bp 56.72 3.61 68.74
NECEvent2014_2_8_scaffold_1295 172_008_scaffold_1295
Species: Actinomyces viscosus (50%)
2 2248 bp 48.75 3.60 89.15
NECEvent2014_2_8_scaffold_1615 172_008_scaffold_1615 2 1918 bp 48.07 3.60 31.91
NECEvent2014_2_8_scaffold_2817 172_008_scaffold_2817
Species: Dorea longicatena (50%)
2 1338 bp 49.03 3.59 98.21
NECEvent2014_2_8_scaffold_4229 172_008_scaffold_4229
Species: Peptoclostridium difficile (50%)
2 1002 bp 41.52 3.59 88.32
NECEvent2014_2_8_scaffold_2457 172_008_scaffold_2457
Species: Eggerthella sp. YY7918 (100%)
1 1462 bp 50.48 3.49 99.73
NECEvent2014_2_8_scaffold_4004 172_008_scaffold_4004
Species: Eggerthella lenta (100%)
1 1044 bp 52.11 3.45 99.71
NECEvent2014_2_8_scaffold_2995 172_008_scaffold_2995
Species: Fusobacterium sp. CM22 (100%)
1 1281 bp 32.01 3.40 100.00
NECEvent2014_2_8_scaffold_3160 172_008_scaffold_3160
Species: Eggerthella sp. HGA1 (100%)
2 1234 bp 49.11 3.40 100.65
NECEvent2014_2_8_scaffold_2121 172_008_scaffold_2121
Species: Eggerthella lenta (100%)
2 1602 bp 52.75 3.28 90.64
NECEvent2014_2_8_scaffold_4195 172_008_scaffold_4195
Species: Peptoclostridium difficile (100%)
1 1007 bp 22.24 3.28 99.80
NECEvent2014_2_8_scaffold_3691 172_008_scaffold_3691
Species: Staphylococcus epidermidis (100%)
1 1105 bp 36.29 3.26 95.57
NECEvent2014_2_8_scaffold_2542 172_008_scaffold_2542 2 1435 bp 54.77 3.24 18.12
NECEvent2014_2_8_scaffold_2112 172_008_scaffold_2112
Species: Eggerthella sp. HGA1 (100%)
2 1606 bp 54.48 3.18 75.28
NECEvent2014_2_8_scaffold_2173 172_008_scaffold_2173
Species: Brachyspira hyodysenteriae (50%)
2 1580 bp 48.99 3.04 100.06
NECEvent2014_2_8_scaffold_1958 172_008_scaffold_1958
Order: Clostridiales (66.67%)
3 1695 bp 49.20 3.01 91.68
NECEvent2014_2_8_scaffold_4216 172_008_scaffold_4216
Species: Eggerthella sp. HGA1 (100%)
1 1003 bp 56.03 2.99 99.60
NECEvent2014_2_8_scaffold_4231 172_008_scaffold_4231
Species: Eggerthella sp. HGA1 (100%)
1 1002 bp 52.10 2.99 99.70
NECEvent2014_2_8_scaffold_2286 172_008_scaffold_2286
Species: Eggerthella lenta (66.67%)
3 1529 bp 55.85 2.94 75.93
NECEvent2014_2_8_scaffold_3564 172_008_scaffold_3564
Species: [Clostridium] innocuum (50%)
2 1135 bp 42.11 2.91 96.74
NECEvent2014_2_8_scaffold_1829 172_008_scaffold_1829
Phylum: Firmicutes (66.67%)
3 1763 bp 34.77 2.89 76.91
NECEvent2014_2_8_scaffold_4197 172_008_scaffold_4197
Species: Eggerthella sp. YY7918 (100%)
2 1007 bp 52.63 2.83 99.80
NECEvent2014_2_8_scaffold_3859 172_008_scaffold_3859
Species: Eggerthella lenta (100%)
2 1074 bp 53.07 2.79 100.00
NECEvent2014_2_8_scaffold_1649 172_008_scaffold_1649
Species: Streptococcus mitis (66.67%)
3 1886 bp 29.64 2.70 71.26
NECEvent2014_2_8_scaffold_3653 172_008_scaffold_3653 1 1112 bp 57.73 2.56 43.97
NECEvent2014_2_8_scaffold_3750 172_008_scaffold_3750
Species: Escherichia coli (100%)
1 1092 bp 54.85 2.47 99.73
NECEvent2014_2_8_scaffold_4158 172_008_scaffold_4158
Species: Eggerthella sp. HGA1 (100%)
2 1014 bp 49.90 2.37 101.18
NECEvent2014_2_8_scaffold_3919 172_008_scaffold_3919
Species: [Clostridium] citroniae (50%)
2 1063 bp 44.40 2.26 55.32
Displaying items 101-129 of 129 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.