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NECEvent2014_2_8_UNK

In projects: NECEvent2014_2_8
Displaying items 1-50 of 129 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_2_8_scaffold_1335 172_008_scaffold_1335 0 2193 bp 48.15 17.10 0.00
NECEvent2014_2_8_scaffold_3689 172_008_scaffold_3689 0 1105 bp 29.41 5.02 0.00
NECEvent2014_2_8_scaffold_3443 172_008_scaffold_3443 0 1166 bp 51.46 91.34 0.00
NECEvent2014_2_8_scaffold_2995 172_008_scaffold_2995
Species: Fusobacterium sp. CM22 (100%)
1 1281 bp 32.01 3.40 100.00
NECEvent2014_2_8_scaffold_1720 172_008_scaffold_1720
Species: Peptoclostridium difficile (100%)
1 1840 bp 22.34 5.38 64.08
NECEvent2014_2_8_scaffold_4004 172_008_scaffold_4004
Species: Eggerthella lenta (100%)
1 1044 bp 52.11 3.45 99.71
NECEvent2014_2_8_scaffold_4005 172_008_scaffold_4005
Species: Enterococcus faecium (100%)
1 1044 bp 37.64 45.40 90.80
NECEvent2014_2_8_scaffold_4012 172_008_scaffold_4012 1 1042 bp 38.77 11.80 6.62
NECEvent2014_2_8_scaffold_3268 172_008_scaffold_3268
Species: Salmonella enterica (100%)
1 1207 bp 48.14 1276.68 83.26
NECEvent2014_2_8_scaffold_3272 172_008_scaffold_3272
Species: Lactobacillus amylovorus (100%)
1 1206 bp 42.79 49.38 87.31
NECEvent2014_2_8_scaffold_1505 172_008_scaffold_1505
Species: Peptoclostridium difficile (100%)
1 2463 bp 49.33 118.57 5.36
NECEvent2014_2_8_scaffold_2283 172_008_scaffold_2283
Species: Hungatella hathewayi (100%)
1 1529 bp 49.12 4.32 96.53
NECEvent2014_2_8_scaffold_4056 172_008_scaffold_4056
Species: Peptoclostridium difficile (100%)
1 1033 bp 37.08 7.55 99.90
NECEvent2014_2_8_scaffold_3320 172_008_scaffold_3320 1 1195 bp 46.11 4.02 39.92
NECEvent2014_2_8_scaffold_2837 172_008_scaffold_2837
Species: Peptoclostridium difficile (100%)
1 1331 bp 37.94 11.95 91.51
NECEvent2014_2_8_scaffold_2077 172_008_scaffold_2077
Species: Erysipelotrichaceae bacterium 3_1_53 (100%)
1 1620 bp 42.10 9.44 100.00
NECEvent2014_2_8_scaffold_4118 172_008_scaffold_4118
Species: Klebsiella pneumoniae (100%)
1 1656 bp 53.86 1781.97 30.43
NECEvent2014_2_8_scaffold_3125 172_008_scaffold_3125
Species: Enterococcus faecalis (100%)
1 1243 bp 45.70 6.64 89.78
NECEvent2014_2_8_scaffold_3136 172_008_scaffold_3136
Species: [Ruminococcus] torques (100%)
1 1240 bp 40.40 17.78 85.89
NECEvent2014_2_8_scaffold_1349 172_008_scaffold_1349
Species: Ascaris suum (100%)
1 2173 bp 47.68 18.29 4.97
NECEvent2014_2_8_scaffold_2117 172_008_scaffold_2117
Species: Peptoclostridium difficile (100%)
1 1604 bp 36.53 6.92 97.26
NECEvent2014_2_8_scaffold_3653 172_008_scaffold_3653 1 1112 bp 57.73 2.56 43.97
NECEvent2014_2_8_scaffold_2384 172_008_scaffold_2384
Species: Eggerthella sp. HGA1 (100%)
1 1492 bp 50.87 3.92 34.79
NECEvent2014_2_8_scaffold_875 172_008_scaffold_875
Species: Enterococcus faecalis (100%)
1 2982 bp 47.25 3.72 100.00
NECEvent2014_2_8_scaffold_2411 172_008_scaffold_2411
Species: Peptoclostridium difficile (100%)
1 1478 bp 22.19 4.06 76.73
NECEvent2014_2_8_scaffold_3691 172_008_scaffold_3691
Species: Staphylococcus epidermidis (100%)
1 1105 bp 36.29 3.26 95.57
NECEvent2014_2_8_scaffold_3180 172_008_scaffold_3180
Species: Peptoclostridium difficile (100%)
1 1230 bp 21.95 5.00 72.44
NECEvent2014_2_8_scaffold_4181 172_008_scaffold_4181 1 1009 bp 22.79 4.16 5.95
NECEvent2014_2_8_scaffold_4195 172_008_scaffold_4195
Species: Peptoclostridium difficile (100%)
1 1007 bp 22.24 3.28 99.80
NECEvent2014_2_8_scaffold_1925 172_008_scaffold_1925
Species: Adlercreutzia equolifaciens (100%)
1 1710 bp 51.52 4.91 96.49
NECEvent2014_2_8_scaffold_2696 172_008_scaffold_2696
Species: Peptoclostridium difficile (100%)
1 1370 bp 36.28 6.79 97.88
NECEvent2014_2_8_scaffold_2443 172_008_scaffold_2443
Species: Enterococcus faecium (100%)
1 1466 bp 39.15 29.57 81.04
NECEvent2014_2_8_scaffold_1677 172_008_scaffold_1677
Species: Lactobacillus paracasei (100%)
1 1871 bp 49.65 73.84 8.98
NECEvent2014_2_8_scaffold_4216 172_008_scaffold_4216
Species: Eggerthella sp. HGA1 (100%)
1 1003 bp 56.03 2.99 99.60
NECEvent2014_2_8_scaffold_3728 172_008_scaffold_3728
Species: Coprobacillus sp. 29_1 (100%)
1 1096 bp 46.08 6.71 93.89
NECEvent2014_2_8_scaffold_3730 172_008_scaffold_3730
Species: Peptoclostridium difficile (100%)
1 1096 bp 46.72 11.22 93.89
NECEvent2014_2_8_scaffold_3478 172_008_scaffold_3478 1 1155 bp 51.08 5.19 15.84
NECEvent2014_2_8_scaffold_2457 172_008_scaffold_2457
Species: Eggerthella sp. YY7918 (100%)
1 1462 bp 50.48 3.49 99.73
NECEvent2014_2_8_scaffold_926 172_008_scaffold_926
Species: Peptoclostridium difficile (100%)
1 2881 bp 42.52 13.95 98.82
NECEvent2014_2_8_scaffold_4231 172_008_scaffold_4231
Species: Eggerthella sp. HGA1 (100%)
1 1002 bp 52.10 2.99 99.70
NECEvent2014_2_8_scaffold_4235 172_008_scaffold_4235
Species: Staphylococcus epidermidis (100%)
1 1001 bp 31.57 4.35 99.80
NECEvent2014_2_8_scaffold_3750 172_008_scaffold_3750
Species: Escherichia coli (100%)
1 1092 bp 54.85 2.47 99.73
NECEvent2014_2_8_scaffold_1715 172_008_scaffold_1715
Species: Blautia sp. KLE 1732 (100%)
2 1844 bp 44.36 4.07 99.40
NECEvent2014_2_8_scaffold_1215 172_008_scaffold_1215
Species: [Clostridium] spiroforme (50%)
2 2359 bp 23.10 7.50 91.82
NECEvent2014_2_8_scaffold_986 172_008_scaffold_986
Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (100%)
2 2728 bp 45.67 5.28 99.74
NECEvent2014_2_8_scaffold_3564 172_008_scaffold_3564
Species: [Clostridium] innocuum (50%)
2 1135 bp 42.11 2.91 96.74
NECEvent2014_2_8_scaffold_2542 172_008_scaffold_2542 2 1435 bp 54.77 3.24 18.12
NECEvent2014_2_8_scaffold_764 172_008_scaffold_764
Species: Peptoclostridium difficile (100%)
2 3335 bp 44.56 15.47 99.94
NECEvent2014_2_8_scaffold_3836 172_008_scaffold_3836
Species: Eggerthella sp. HGA1 (100%)
2 1077 bp 54.78 5.29 84.96
NECEvent2014_2_8_scaffold_2817 172_008_scaffold_2817
Species: Dorea longicatena (50%)
2 1338 bp 49.03 3.59 98.21
Displaying items 1-50 of 129 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.