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NECEvent2014_2_3_scaffold_204_19

Organism: NECEvent2014_2_3_Peptoniphilus_harei-rel_34_8

near complete RP 50 / 55 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: comp(20342..23821)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=908338 species="Bacteria; Fi similarity UNIPROT
DB: UniProtKB
  • Identity: 98.9
  • Coverage: 999.99
  • Bit_score: 2228
  • Evalue 0.0
mfd; Transcription-repair-coupling factor (EC:3.6.4.-) similarity KEGG
DB: KEGG
  • Identity: 55.0
  • Coverage: 999.99
  • Bit_score: 1252
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KY49_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 99.0
  • Coverage: 999.99
  • Bit_score: 2230
  • Evalue 0.0
  • rbh

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Taxonomy

Peptoniphilus harei → Peptoniphilus → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3480
TTGAATTTTTTAATCAATAGTGTAAAGAATCTAGAAGCTTTTAAGGAATTAGATAATTCAATAAAAATTTCAAAGAACACTGCAGTCTTTGGTTCAGAGGAGGCAGTGCTCTCTCTTTTTGCACCCACTTTTGCAGCTGATGGCAAAAAAGTCTGCCTTATCTCACAAGATAGGGTGAGGGCAAGAAAGGCCTACGAGGATATTGAGTCCATCTCAGATGAGACCTGTGTCTATTATCCAGAAAAGGACGTCTTTTTCTACGACAGGGATTCAAAGTCCAAGGAGAACACAAAGAAGAGGCTAGAAGCCATGGCAGAGATTTCAAGTGGCAGGGCCAAGATGGTTGTCACAACCTTAAACGCCTTGACTGCAAAGATATCAAGACCAGAAATTTTTGCATCTTATAAGATTCCTATAGAAGTTGGGCAAGTTTTGAATCTTGACGTCCTACCCAAGAAGCTTGTGGAAATGGGTTACGAAAGATTTCCAAGCGTTGAGGGTCTAGGTCAATTTTCTCTTAGGGGTTCCATCATTGATATTGGGACTCAAGATGCCAACTACAGGATAGAACTTTTTGATGACGAAGTTGATTCCATTAGGTCCTTTGAAATTGAAAACCAAAGGTCCATTGAAAAGCTAGAAAAAATCACAATCTATCCCATAGAAGACTTGATTATAAAAGCAGACGAAAGAGATCAAGTTGCTGAGAGAATTAAAAAAGACCTTTCCAAGACCAAGCTCCAGGGGAAAGAAAAAGATAGACTCAATGAAAAGTTTTTGAGATACGTTGACAGGTTAGAAAACCAAGAGACTATTATCAACAAGGACCTAATCCTTCCTTATGTAGACCAAGAAGAAGTGGGATCCTTCTTAGATTACTTGGATGATTTTATATTTTTAATTGAAGAGCCTTCCAGGATTCTTGAAAGAGAAGAAGAACTTGATCTTGCAAATGGAGAAAAGTTTGCAATCTTAATAGAGAATGGTGAAGTCACAAAGTCTCACGAAAAAACTTTTTACAACTATAAGGACATAGTCGACAAGTTAAATGAAAAAACTTTAATAACTTTTAACGCCCTATTGAAGCCACCAAAGATGTTTAAGCCAAAGGACATTGTGAACATCAAGGTCAAGAGCGTGACAAACTACATGTCAAAGATAAAACTTTTCAAGGAAGACCTAGACTATTATGGAAAAAATAATTTCCAAGTCATCCTCCTTGGGGCAACAGAAAAAAGAGCCAAGCGTCTTTTTGATCACCTTGTGGACTTGGGCTACTCACCACACTTGGCAAAAAATACAAAGAATGAAAAAATCACTTCCAAGCTTGTTGTCACTACTGGTGCCTTAAATGAAGGAATAGAATTTTCAGATTCAAAGACAGTTTTTATTAATTATTCAGAAATTTATGGGTCCTTCTCAAAGAATAAAAAGAAAAAACCAGCTAAGAAGAAGGCACTAAACTTTGAAGATTTACAAATTGGTGACTACGTAGTTCACGAGGCCCATGGTGTTGGTAAATATGTTGGGACAAGAAGACTTGAAGTCTCAGGCATACAAAAGGACTACATTCTTATTGAGTACGGTGGAGAGGACAAACTCTTCCTTCCAATAGAAGCTCTTGATTCCATTTACAAGTACGTACAAGAGGGCAAGAGGCCGCCAAAGGTCAACAAGTTAAACTCTCTTGACTGGAAAAAGAAAAAGGCTCGTGCAAGACAGTCCATTGACGACATGGCTGAGGACTTAATAAAACTCTACGCAACTCGTGAGAATACCAAAGGCTTTGCCTTTAGTGAGGACTCCCAATATCAAAGGGAGTTTGAGGATGCCTTCATCTATGAAGAAACTCCTGGCCAGTTGAAGTCTGCTGAAGAGATAAAAGAAGACATGGAGAAGGCATCTCCAATGGATAGACTTCTCTGCGCCGACGTTGGTTATGGAAAGACAGAGGTTGCCCTTCGTGCAGCCTTTAAAGCAATACTTGACGGAAAGCAAGTTGCAATTCTTGTGCCAACAACTATATTAGCTCAGCAACACTACAACACAATTAAGGAGAGGTTTAAAAACTTCCCTGTGGGAGTTGGACTTCTATCAAGGTTTAGGTCCAAGAAGGATCAGAAGATGGACCTTGAAGGTCTGAAGGATGGCAACATTGATATAATAGTGGGAACTCACAGGCTCCTTTCCAAGGACGTGAAGTTCAAGGACTTGGGACTTTTAATTATTGACGAAGAGCAAAGATTTGGAGTTCGTCACAAGGAAAAGTTGAGGATGCTAAAGGAAAATGTAGACACCTTAACTCTAACAGCCACACCAATTCCAAGGACTCTTCAGATGTCTATGATTGGAATAAGGGACATGTCTGTTATTGAAGAGCCACCTGAAGAGAGATTTCCAGTGGAAACTTACGTCCTAGAGTATAACAACCTCATGGTTCGTGAGGCCATCCTAAAGGAAATTGAAAGGGGAGGACAAGTTTACTTCCTCTACAACAAGGTTTCAAATATGGAAAATAAACTTTTGGAACTTAGGAAGCTTGTGCCAGAGGCGACCTTCTCTATGGCAAATGGTCAGATGACTGAGAAGGCCCTTGAAGATACAATGATTGACTTCATAGAGGGTAATGTTGACGTATTAGTTTGCTCAACTATAATAGAAACGGGTATGGACGTTCCCAATGCAAACACAATGATAATAACAGACTCCAATAGGTTGGGACTTTCACAACTTTATCAACTTCGTGGAAGGATAGGCAGGTCATCGAGAATTGCCTACGCCTACTTCACCTACGACAGGTCCACATCAATCTCTGAAGTGGCACAAAAGAGACTCCAAGCTATAAAAGAGTTCACTGAGTTTGGGTCAGGTCACAAGATTGCAGAAAGAGACCTCGAGATAAGAGGGTCTGGATCCATACTAGGGTCAAGACAGTCAGGTCACATAGAAAAAATTGGTTACGACCTCTACATGAAGTATCTAAAGGATGCTGTCATGAAGTTAAAGGGTCTTGATGTTGAAGAAGAAATTGAAACTACAATTGATCTCAAGCTGGATTCCTTTATACCAAAAGAATATATTGCTGATGACAGGACAAGGCTTGAGATTTATAAAAAGATTTCTGTTTTATCAACTGAAGAAGAGTACTCAGACCTTGTTGATGAATTAATCGACAGGTTCTCAGACTTCCCTGATGAAGTTTCAAACCTAATGGACATTGCCCTCTTAAAGAACAAGGCCCAAAAGGCAAAAGTTTCATCTATTGTTGAGAGAAGAGGAGAATATAGGGTAAGAGTAGAAGGTGAGGTTGAGCTTCCTGCCATAATGGAAATAAACAACGAGTTCGAAAATGTTTCCTACTCTATGGGCAATGTTAATGAAATTGTATTGACTAAGCTCAAGTATCCTCTCGATAAGCTTAAAAAACTAGTTACAATTTTGTATTTACACAAAAAGGACACAAAAACTTCTAAAAAGTAG
PROTEIN sequence
Length: 1160
LNFLINSVKNLEAFKELDNSIKISKNTAVFGSEEAVLSLFAPTFAADGKKVCLISQDRVRARKAYEDIESISDETCVYYPEKDVFFYDRDSKSKENTKKRLEAMAEISSGRAKMVVTTLNALTAKISRPEIFASYKIPIEVGQVLNLDVLPKKLVEMGYERFPSVEGLGQFSLRGSIIDIGTQDANYRIELFDDEVDSIRSFEIENQRSIEKLEKITIYPIEDLIIKADERDQVAERIKKDLSKTKLQGKEKDRLNEKFLRYVDRLENQETIINKDLILPYVDQEEVGSFLDYLDDFIFLIEEPSRILEREEELDLANGEKFAILIENGEVTKSHEKTFYNYKDIVDKLNEKTLITFNALLKPPKMFKPKDIVNIKVKSVTNYMSKIKLFKEDLDYYGKNNFQVILLGATEKRAKRLFDHLVDLGYSPHLAKNTKNEKITSKLVVTTGALNEGIEFSDSKTVFINYSEIYGSFSKNKKKKPAKKKALNFEDLQIGDYVVHEAHGVGKYVGTRRLEVSGIQKDYILIEYGGEDKLFLPIEALDSIYKYVQEGKRPPKVNKLNSLDWKKKKARARQSIDDMAEDLIKLYATRENTKGFAFSEDSQYQREFEDAFIYEETPGQLKSAEEIKEDMEKASPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAILVPTTILAQQHYNTIKERFKNFPVGVGLLSRFRSKKDQKMDLEGLKDGNIDIIVGTHRLLSKDVKFKDLGLLIIDEEQRFGVRHKEKLRMLKENVDTLTLTATPIPRTLQMSMIGIRDMSVIEEPPEERFPVETYVLEYNNLMVREAILKEIERGGQVYFLYNKVSNMENKLLELRKLVPEATFSMANGQMTEKALEDTMIDFIEGNVDVLVCSTIIETGMDVPNANTMIITDSNRLGLSQLYQLRGRIGRSSRIAYAYFTYDRSTSISEVAQKRLQAIKEFTEFGSGHKIAERDLEIRGSGSILGSRQSGHIEKIGYDLYMKYLKDAVMKLKGLDVEEEIETTIDLKLDSFIPKEYIADDRTRLEIYKKISVLSTEEEYSDLVDELIDRFSDFPDEVSNLMDIALLKNKAQKAKVSSIVERRGEYRVRVEGEVELPAIMEINNEFENVSYSMGNVNEIVLTKLKYPLDKLKKLVTILYLHKKDTKTSKK*