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NECEvent2014_3_3_UNK

In projects: NECEvent2014_3_3
Displaying items 251-300 of 363 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_3_scaffold_1151 173_001_scaffold_1151
Species: Peptoclostridium difficile (60%)
5 4558 bp 34.60 8.79 89.71
NECEvent2014_3_3_scaffold_2855 173_001_scaffold_2855
Species: Clostridium botulinum (50%)
2 1878 bp 29.13 8.79 80.35
NECEvent2014_3_3_scaffold_571 173_001_scaffold_571
Phylum: Firmicutes (77.78%)
9 8994 bp 31.72 8.82 95.73
NECEvent2014_3_3_scaffold_2225 173_001_scaffold_2225
Species: Alkaliphilus metalliredigens (100%)
2 2398 bp 34.70 8.82 98.21
NECEvent2014_3_3_scaffold_1960 173_001_scaffold_1960
Species: Clostridium sp. HMP27 (50%)
4 2706 bp 32.93 8.87 100.55
NECEvent2014_3_3_scaffold_1541 173_001_scaffold_1541
Species: Paenibacillus riograndensis (75%)
4 3468 bp 26.70 8.87 96.37
NECEvent2014_3_3_scaffold_2325 173_001_scaffold_2325
Species: Peptoclostridium difficile (50%)
2 2301 bp 25.86 8.87 94.92
NECEvent2014_3_3_scaffold_1556 173_001_scaffold_1556
Species: Alkaliphilus oremlandii (100%)
3 3444 bp 32.38 8.89 97.47
NECEvent2014_3_3_scaffold_1144 173_001_scaffold_1144
Species: Alkaliphilus oremlandii (75%)
4 4587 bp 32.00 8.96 90.65
NECEvent2014_3_3_scaffold_1195 173_001_scaffold_1195
Domain: Bacteria (60%)
5 4407 bp 30.77 8.99 69.71
NECEvent2014_3_3_scaffold_3249 173_001_scaffold_3249
Species: Viridibacillus arenosi (50%)
2 1652 bp 30.75 8.99 69.55
NECEvent2014_3_3_scaffold_1748 173_001_scaffold_1748
Species: Dorea formicigenerans (66.67%)
3 3059 bp 33.25 9.02 96.31
NECEvent2014_3_3_scaffold_2507 173_001_scaffold_2507
Species: Paenibacillus terrae (50%)
2 2148 bp 26.26 9.08 94.27
NECEvent2014_3_3_scaffold_3319 173_001_scaffold_3319
Species: Holdemania filiformis (50%)
2 1618 bp 27.75 9.09 72.13
NECEvent2014_3_3_scaffold_3526 173_001_scaffold_3526
Species: Clostridium aceticum (66.67%)
3 1514 bp 29.06 9.11 59.45
NECEvent2014_3_3_scaffold_3371 173_001_scaffold_3371
Species: Treponema lecithinolyticum (100%)
1 1594 bp 34.69 9.13 99.94
NECEvent2014_3_3_scaffold_2401 173_001_scaffold_2401
Species: Desulfitobacterium dehalogenans (100%)
2 2232 bp 35.13 9.14 83.60
NECEvent2014_3_3_scaffold_444 173_001_scaffold_444
Order: Clostridiales (50%)
6 11064 bp 31.84 9.14 88.42
NECEvent2014_3_3_scaffold_907 173_001_scaffold_907
Phylum: Firmicutes (100%)
7 5947 bp 32.00 9.16 73.30
NECEvent2014_3_3_scaffold_4434 173_001_scaffold_4434
Species: Dorea formicigenerans (100%)
1 1179 bp 34.44 9.16 90.33
NECEvent2014_3_3_scaffold_4137 173_001_scaffold_4137
Species: Tepidanaerobacter acetatoxydans (100%)
1 1270 bp 31.10 9.21 99.92
NECEvent2014_3_3_scaffold_1904 173_001_scaffold_1904
Species: Peptococcaceae bacterium BRH_c23 (50%)
2 2785 bp 30.77 9.21 92.53
NECEvent2014_3_3_scaffold_2229 173_001_scaffold_2229
Species: GWB2_Clostridiales_37_7_curated (100%)
2 2393 bp 28.29 9.28 93.40
NECEvent2014_3_3_scaffold_2306 173_001_scaffold_2306
Genus: Peptoniphilus (60%)
5 2324 bp 32.36 9.29 99.01
NECEvent2014_3_3_scaffold_3461 173_001_scaffold_3461
Species: [Clostridium] saccharolyticum (50%)
2 1546 bp 36.87 9.31 89.84
NECEvent2014_3_3_scaffold_575 173_001_scaffold_575
Order: Clostridiales (57.14%)
7 8936 bp 33.62 9.40 90.71
NECEvent2014_3_3_scaffold_2964 173_001_scaffold_2964 3 1813 bp 31.16 9.43 64.70
NECEvent2014_3_3_scaffold_636 173_001_scaffold_636
Species: Alkaliphilus oremlandii (55.56%)
9 8229 bp 31.33 9.48 97.34
NECEvent2014_3_3_scaffold_2524 173_001_scaffold_2524
Species: Clostridiales bacterium S5-A14a (50%)
2 2133 bp 32.72 9.49 87.90
NECEvent2014_3_3_scaffold_862 173_001_scaffold_862
Species: Alkaliphilus oremlandii (100%)
5 6218 bp 33.97 9.50 98.13
NECEvent2014_3_3_scaffold_2938 173_001_scaffold_2938
Species: Clostridium argentinense (50%)
2 1829 bp 30.45 9.51 80.70
NECEvent2014_3_3_scaffold_1649 173_001_scaffold_1649
Order: Clostridiales (66.67%)
3 3248 bp 31.87 9.56 92.73
NECEvent2014_3_3_scaffold_2759 173_001_scaffold_2759 1 1945 bp 27.81 9.56 84.52
NECEvent2014_3_3_scaffold_4491 173_001_scaffold_4491
Species: Eubacterium acidaminophilum (100%)
1 1156 bp 29.76 9.60 59.17
NECEvent2014_3_3_scaffold_1396 173_001_scaffold_1396
Genus: Clostridium (50%)
6 3830 bp 31.64 9.63 76.53
NECEvent2014_3_3_scaffold_539 173_001_scaffold_539
Order: Clostridiales (50%)
14 9386 bp 32.09 9.72 98.92
NECEvent2014_3_3_scaffold_1973 173_001_scaffold_1973
Species: [Clostridium] celerecrescens (50%)
4 2683 bp 35.97 9.73 73.02
NECEvent2014_3_3_scaffold_1531 173_001_scaffold_1531
Species: Desulfotomaculum gibsoniae (50%)
4 3497 bp 33.54 9.74 88.36
NECEvent2014_3_3_scaffold_1043 173_001_scaffold_1043
Species: Sporolactobacillus laevolacticus (60%)
5 5013 bp 30.10 9.75 95.27
NECEvent2014_3_3_scaffold_656 173_001_scaffold_656
Order: Clostridiales (50%)
8 8077 bp 32.02 9.88 90.89
NECEvent2014_3_3_scaffold_2260 173_001_scaffold_2260
Species: Alkaliphilus metalliredigens (50%)
2 2363 bp 32.16 9.90 93.69
NECEvent2014_3_3_scaffold_2523 173_001_scaffold_2523
Order: Bacillales (66.67%)
3 2134 bp 33.22 9.91 98.27
NECEvent2014_3_3_scaffold_741 173_001_scaffold_741
Class: Clostridia (55.56%)
9 7196 bp 30.34 9.92 81.67
NECEvent2014_3_3_scaffold_1947 173_001_scaffold_1947
Species: Moorella glycerini (66.67%)
3 2725 bp 33.32 9.96 88.73
NECEvent2014_3_3_scaffold_1168 173_001_scaffold_1168
Species: Clostridium sp. HMP27 (50%)
2 4495 bp 32.57 10.01 86.50
NECEvent2014_3_3_scaffold_2551 173_001_scaffold_2551
Species: Youngiibacter fragilis (50%)
2 2119 bp 33.41 10.05 88.91
NECEvent2014_3_3_scaffold_1329 173_001_scaffold_1329
Species: Alkaliphilus metalliredigens (50%)
8 3994 bp 31.75 10.07 100.50
NECEvent2014_3_3_scaffold_3117 173_001_scaffold_3117
Species: Clostridium tetanomorphum (50%)
2 1720 bp 29.65 10.12 97.50
NECEvent2014_3_3_scaffold_3835 173_001_scaffold_3835
Species: Clostridium ultunense (50%)
2 1378 bp 27.87 10.12 58.13
NECEvent2014_3_3_scaffold_475 173_001_scaffold_475
Order: Clostridiales (100%)
13 10402 bp 35.57 10.14 93.85
Displaying items 251-300 of 363 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.