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NECEvent2014_3_3_UNK

In projects: NECEvent2014_3_3
Displaying items 251-300 of 363 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_3_scaffold_2227 173_001_scaffold_2227
Phylum: Firmicutes (75%)
4 2396 bp 27.30 6.89 79.26
NECEvent2014_3_3_scaffold_3031 173_001_scaffold_3031
Domain: Bacteria (66.67%)
3 1775 bp 27.44 6.85 91.61
NECEvent2014_3_3_scaffold_1790 173_001_scaffold_1790
Domain: Bacteria (100%)
3 2990 bp 25.35 6.82 91.00
NECEvent2014_3_3_scaffold_2203 173_001_scaffold_2203
Species: RBG_13_Chloroflexi_46_9_curated (50%)
4 2424 bp 31.35 6.81 98.39
NECEvent2014_3_3_scaffold_2532 173_001_scaffold_2532
Species: Fervidicella metallireducens (50%)
2 2127 bp 30.65 6.77 97.18
NECEvent2014_3_3_scaffold_488 173_001_scaffold_488
Order: Clostridiales (50%)
12 10232 bp 27.08 6.77 89.66
NECEvent2014_3_3_scaffold_4628 173_001_scaffold_4628
Species: Alkaliphilus oremlandii (100%)
1 1116 bp 31.27 6.72 73.12
NECEvent2014_3_3_scaffold_4295 173_001_scaffold_4295
Species: Enterobacter aerogenes (100%)
2 1218 bp 56.49 6.65 98.52
NECEvent2014_3_3_scaffold_4200 173_001_scaffold_4200
Species: Enterobacter aerogenes (100%)
1 1245 bp 59.04 6.63 72.77
NECEvent2014_3_3_scaffold_1713 173_001_scaffold_1713
Species: Enterobacter aerogenes (60%)
5 3126 bp 37.27 6.62 89.25
NECEvent2014_3_3_scaffold_1005 173_001_scaffold_1005
Species: Streptococcus anginosus (100%)
7 5259 bp 45.10 6.62 96.29
NECEvent2014_3_3_scaffold_3418 173_001_scaffold_3418
Species: GWD2_Clostridiales_32_59_curated (66.67%)
3 1567 bp 31.14 6.60 77.73
NECEvent2014_3_3_scaffold_1012 173_001_scaffold_1012 7 5234 bp 27.15 6.59 72.33
NECEvent2014_3_3_scaffold_1719 173_001_scaffold_1719
Species: Johnsonella ignava (66.67%)
6 3121 bp 34.35 6.58 96.12
NECEvent2014_3_3_scaffold_4691 173_001_scaffold_4691
Species: Caloramator australicus (100%)
1 1096 bp 36.13 6.57 99.63
NECEvent2014_3_3_scaffold_1870 173_001_scaffold_1870
Domain: Bacteria (66.67%)
3 2839 bp 24.62 6.55 98.49
NECEvent2014_3_3_scaffold_2819 173_001_scaffold_2819
Species: Caloranaerobacter azorensis (50%)
2 1901 bp 32.04 6.55 87.90
NECEvent2014_3_3_scaffold_2333 173_001_scaffold_2333
Genus: Facklamia (66.67%)
3 2291 bp 28.55 6.55 93.89
NECEvent2014_3_3_scaffold_2442 173_001_scaffold_2442
Phylum: Firmicutes (66.67%)
3 2201 bp 27.58 6.54 78.10
NECEvent2014_3_3_scaffold_3808 173_001_scaffold_3808
Species: Caloranaerobacter azorensis (50%)
2 1391 bp 31.13 6.47 79.80
NECEvent2014_3_3_scaffold_4945 173_001_scaffold_4945
Species: Escherichia coli (100%)
1 1026 bp 55.85 6.43 99.71
NECEvent2014_3_3_scaffold_1489 173_001_scaffold_1489
Species: Clostridium butyricum (50%)
2 3600 bp 27.08 6.42 98.58
NECEvent2014_3_3_scaffold_2375 173_001_scaffold_2375 5 2261 bp 54.05 6.37 89.96
NECEvent2014_3_3_scaffold_2619 173_001_scaffold_2619
Species: Escherichia coli (100%)
2 2052 bp 54.68 6.29 97.81
NECEvent2014_3_3_scaffold_1478 173_001_scaffold_1478 3 3625 bp 24.47 6.29 93.10
NECEvent2014_3_3_scaffold_4670 173_001_scaffold_4670
Species: Clostridium sp. NCR (100%)
1 1103 bp 27.56 6.26 99.82
NECEvent2014_3_3_scaffold_2782 173_001_scaffold_2782
Species: Enterobacter aerogenes (50%)
2 1927 bp 53.55 6.23 89.36
NECEvent2014_3_3_scaffold_3008 173_001_scaffold_3008
Species: Enterobacter aerogenes (100%)
3 1786 bp 57.05 6.22 89.03
NECEvent2014_3_3_scaffold_2357 173_001_scaffold_2357
Species: Roseburia hominis (66.67%)
3 2274 bp 29.51 6.20 93.93
NECEvent2014_3_3_scaffold_3003 173_001_scaffold_3003
Species: [Clostridium] papyrosolvens (50%)
2 1790 bp 26.93 6.20 93.02
NECEvent2014_3_3_scaffold_4386 173_001_scaffold_4386
Species: Escherichia coli (50%)
2 1191 bp 43.24 6.17 69.27
NECEvent2014_3_3_scaffold_1755 173_001_scaffold_1755
Species: Mogibacterium sp. CM50 (66.67%)
3 3043 bp 32.73 6.16 72.95
NECEvent2014_3_3_scaffold_3631 173_001_scaffold_3631
Species: Haloplasma contractile (100%)
1 1466 bp 28.04 6.14 99.86
NECEvent2014_3_3_scaffold_4927 173_001_scaffold_4927
Species: Citrobacter youngae (50%)
2 1030 bp 48.83 6.12 26.70
NECEvent2014_3_3_scaffold_3733 173_001_scaffold_3733
Species: Alkaliphilus metalliredigens (50%)
2 1426 bp 28.26 6.10 70.48
NECEvent2014_3_3_scaffold_3717 173_001_scaffold_3717
Order: Enterobacteriales (100%)
3 1433 bp 44.17 6.07 95.05
NECEvent2014_3_3_scaffold_4893 173_001_scaffold_4893
Species: Alkaliphilus metalliredigens (50%)
2 1039 bp 28.10 6.06 82.87
NECEvent2014_3_3_scaffold_2409 173_001_scaffold_2409
Species: Alkaliphilus oremlandii (100%)
3 2227 bp 27.39 6.06 99.15
NECEvent2014_3_3_scaffold_3763 173_001_scaffold_3763
Species: Enterobacter aerogenes (100%)
3 1411 bp 54.08 6.06 85.68
NECEvent2014_3_3_scaffold_2671 173_001_scaffold_2671 9 2012 bp 28.58 6.04 80.82
NECEvent2014_3_3_scaffold_993 173_001_scaffold_993
Order: Clostridiales (57.14%)
7 5351 bp 31.06 6.03 89.42
NECEvent2014_3_3_scaffold_1623 173_001_scaffold_1623
Species: Enterobacter aerogenes (100%)
3 3296 bp 53.25 6.01 80.19
NECEvent2014_3_3_scaffold_3828 173_001_scaffold_3828
Species: Clostridium sp. IBUN22A (100%)
1 1381 bp 23.75 5.97 99.71
NECEvent2014_3_3_scaffold_2161 173_001_scaffold_2161
Genus: Streptococcus (66.67%)
3 2464 bp 34.21 5.91 84.38
NECEvent2014_3_3_scaffold_4134 173_001_scaffold_4134
Species: Klebsiella pneumoniae (100%)
1 1272 bp 51.65 5.90 100.00
NECEvent2014_3_3_scaffold_2553 173_001_scaffold_2553
Species: Enterobacter aerogenes (100%)
3 2119 bp 59.04 5.88 98.54
NECEvent2014_3_3_scaffold_3700 173_001_scaffold_3700
Species: Streptococcus anginosus (100%)
1 1440 bp 31.81 5.83 40.42
NECEvent2014_3_3_scaffold_3779 173_001_scaffold_3779
Species: Lysinibacillus sp. A1 (66.67%)
3 1402 bp 33.02 5.78 98.86
NECEvent2014_3_3_scaffold_4849 173_001_scaffold_4849
Species: Paenibacillus polymyxa (100%)
1 1050 bp 28.38 5.71 77.71
NECEvent2014_3_3_scaffold_3683 173_001_scaffold_3683
Species: Enterobacter aerogenes (50%)
2 1444 bp 56.72 5.71 88.50
Displaying items 251-300 of 363 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.