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NECEvent2014_3_4_UNK

In projects: NECEvent2014_3_4
Displaying items 1-50 of 70 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_4_scaffold_1658 173_002_scaffold_1658
Species: Paenibacillus sp. TCA20 (100%)
1 2770 bp 49.75 1388.18 5.85
NECEvent2014_3_4_scaffold_1923 173_002_scaffold_1923
Species: Treponema vincentii (100%)
1 1792 bp 35.44 24.19 99.94
NECEvent2014_3_4_scaffold_1925 173_002_scaffold_1925
Species: Treponema vincentii (100%)
1 1789 bp 35.16 26.24 99.94
NECEvent2014_3_4_scaffold_2701 173_002_scaffold_2701
Species: Klebsiella oxytoca (100%)
1 1120 bp 66.61 82.37 99.91
NECEvent2014_3_4_scaffold_2719 173_002_scaffold_2719
Species: Enterobacter aerogenes (100%)
1 1111 bp 55.72 3.78 99.64
NECEvent2014_3_4_scaffold_2478 173_002_scaffold_2478
Species: Alkaliphilus oremlandii (100%)
1 1263 bp 23.36 9.74 47.03
NECEvent2014_3_4_scaffold_2734 173_002_scaffold_2734
Species: Clostridium botulinum (100%)
1 1102 bp 43.56 6.67 92.56
NECEvent2014_3_4_scaffold_2248 173_002_scaffold_2248
Species: Ruminococcaceae bacterium D16 (100%)
1 1464 bp 32.38 42.42 100.00
NECEvent2014_3_4_scaffold_2768 173_002_scaffold_2768
Species: Lachnospiraceae bacterium 8_1_57FAA (100%)
1 1087 bp 31.37 40.29 92.46
NECEvent2014_3_4_scaffold_2267 173_002_scaffold_2267
Species: Atopobium minutum (100%)
1 1448 bp 54.83 4.35 99.24
NECEvent2014_3_4_scaffold_2526 173_002_scaffold_2526
Species: Atopobium minutum (100%)
1 1237 bp 55.46 6.67 99.92
NECEvent2014_3_4_scaffold_2273 173_002_scaffold_2273
Species: Klebsiella oxytoca (100%)
1 1444 bp 52.42 26.28 99.93
NECEvent2014_3_4_scaffold_2541 173_002_scaffold_2541
Species: Atopobium minutum (100%)
1 1229 bp 55.00 6.83 99.84
NECEvent2014_3_4_scaffold_2803 173_002_scaffold_2803
Species: Clostridium sporogenes (100%)
1 1061 bp 19.51 3.11 99.81
NECEvent2014_3_4_scaffold_2817 173_002_scaffold_2817 1 1055 bp 50.33 241.99 0.00
NECEvent2014_3_4_scaffold_2050 173_002_scaffold_2050
Species: Tepidanaerobacter acetatoxydans (100%)
1 1642 bp 33.98 87.79 71.80
NECEvent2014_3_4_scaffold_2833 173_002_scaffold_2833
Species: Vibrio sp. 04Ya090 (100%)
1 1045 bp 45.07 345.50 99.90
NECEvent2014_3_4_scaffold_2325 173_002_scaffold_2325
Species: Chlamydia trachomatis (100%)
1 1396 bp 40.04 5.91 99.71
NECEvent2014_3_4_scaffold_2589 173_002_scaffold_2589
Species: Klebsiella oxytoca (100%)
1 1201 bp 64.45 34.10 99.92
NECEvent2014_3_4_scaffold_2846 173_002_scaffold_2846
Species: Enterococcus faecalis (100%)
1 1037 bp 36.74 2.31 99.81
NECEvent2014_3_4_scaffold_2864 173_002_scaffold_2864
Species: Enterobacter aerogenes (100%)
1 1025 bp 58.34 3.51 12.59
NECEvent2014_3_4_scaffold_2379 173_002_scaffold_2379
Species: Staphylococcus aureus (100%)
1 1348 bp 30.93 2.89 69.44
NECEvent2014_3_4_scaffold_2901 173_002_scaffold_2901
Species: Haloplasma contractile (100%)
1 1006 bp 28.13 13.12 99.90
NECEvent2014_3_4_scaffold_2395 173_002_scaffold_2395
Species: [Clostridium] clariflavum (100%)
1 1335 bp 31.31 341.24 77.30
NECEvent2014_3_4_scaffold_2400 173_002_scaffold_2400
Species: Klebsiella oxytoca (100%)
1 1331 bp 63.19 34.37 91.74
NECEvent2014_3_4_scaffold_623 173_002_scaffold_623
Species: Aneurinibacillus aneurinilyticus (50%)
2 7888 bp 52.98 78.23 99.57
NECEvent2014_3_4_scaffold_2681 173_002_scaffold_2681
Species: Escherichia coli (50%)
2 1132 bp 35.60 2.92 88.78
NECEvent2014_3_4_scaffold_1671 173_002_scaffold_1671
Species: Actinomyces graevenitzii (100%)
2 2140 bp 56.68 4.14 87.62
NECEvent2014_3_4_scaffold_2184 173_002_scaffold_2184
Species: Geomicrobium sp. JCM 19038 (50%)
2 2622 bp 36.00 39.65 99.08
NECEvent2014_3_4_scaffold_2452 173_002_scaffold_2452
Species: Atopobium sp. ICM42b (50%)
2 1279 bp 55.04 5.51 83.74
NECEvent2014_3_4_scaffold_1439 173_002_scaffold_1439
Species: human gut metagenome (100%)
2 2527 bp 48.24 269.07 16.62
NECEvent2014_3_4_scaffold_1964 173_002_scaffold_1964
Species: BJP_IG2069_Anaerolineales_43_63 (50%)
2 1741 bp 30.67 20.51 85.81
NECEvent2014_3_4_scaffold_1711 173_002_scaffold_1711
Species: Brevibacillus brevis (50%)
2 2071 bp 36.41 84.23 62.00
NECEvent2014_3_4_scaffold_2738 173_002_scaffold_2738
Species: Staphylococcus sp. DORA_6_22 (50%)
2 1101 bp 32.52 7.36 91.28
NECEvent2014_3_4_scaffold_1467 173_002_scaffold_1467
Species: Clostridium sporogenes (50%)
2 2482 bp 24.13 11.48 74.34
NECEvent2014_3_4_scaffold_2508 173_002_scaffold_2508
Species: Enterobacter aerogenes (100%)
2 1249 bp 53.56 2.88 96.56
NECEvent2014_3_4_scaffold_2513 173_002_scaffold_2513
Species: Klebsiella oxytoca (100%)
2 1247 bp 67.36 64.11 98.64
NECEvent2014_3_4_scaffold_2285 173_002_scaffold_2285
Species: Enterobacter aerogenes (100%)
2 1431 bp 59.96 2.52 101.26
NECEvent2014_3_4_scaffold_2838 173_002_scaffold_2838
Species: Atopobium minutum (100%)
2 1041 bp 55.43 5.76 96.83
NECEvent2014_3_4_scaffold_2853 173_002_scaffold_2853
Species: Enterobacter aerogenes (50%)
2 1031 bp 39.77 2.62 27.93
NECEvent2014_3_4_scaffold_1842 173_002_scaffold_1842
Species: Atopobium minutum (100%)
2 1890 bp 56.98 5.95 100.32
NECEvent2014_3_4_scaffold_1863 173_002_scaffold_1863
Species: Trichuris trichiura (50%)
2 1873 bp 54.99 588.31 33.48
NECEvent2014_3_4_scaffold_1610 173_002_scaffold_1610
Species: Paenibacillus sp. FSL R5-0345 (50%)
2 2245 bp 34.43 6.08 93.27
NECEvent2014_3_4_scaffold_1619 173_002_scaffold_1619
Species: Dorea sp. 5-2 (50%)
2 2229 bp 56.84 4.31 74.83
NECEvent2014_3_4_scaffold_2900 173_002_scaffold_2900
Species: Enterobacter aerogenes (50%)
2 1006 bp 51.29 2.83 67.99
NECEvent2014_3_4_scaffold_2902 173_002_scaffold_2902
Species: Enterobacter aerogenes (100%)
2 1006 bp 57.85 3.28 100.20
NECEvent2014_3_4_scaffold_2391 173_002_scaffold_2391
Species: Clostridium saccharoperbutylacetonicum (100%)
2 1339 bp 31.29 52.32 87.83
NECEvent2014_3_4_scaffold_1374 173_002_scaffold_1374
Species: BJP_IG2069_Anaerolineales_43_63 (50%)
2 2659 bp 30.31 34.02 91.16
NECEvent2014_3_4_scaffold_1935 173_002_scaffold_1935
Order: Clostridiales (100%)
3 1780 bp 28.20 13.74 92.36
NECEvent2014_3_4_scaffold_2242 173_002_scaffold_2242 3 1468 bp 44.55 5.93 63.15
Displaying items 1-50 of 70 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.