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NECEvent2014_4_3_UNK

In projects: NECEvent2014_4_3

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 43.46 Longest contig: 25.81 Kbp Bin length: 652.75 Kbp GC content: 40.74 %
Contigs count: 201 Features count: 785 rRNAs count: 4 tRNAs count: 27

Genome completeness

partial RP 0 / 55 BSCG 0 / 51 ASCG 2 / 38
Displaying items 101-150 of 201 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_3_scaffold_1198 174_003_scaffold_1198
Species: Phascolarctobacterium sp. CAG:266 (50%)
2 1306 bp 41.12 8.61 100.38
NECEvent2014_4_3_scaffold_1199 174_003_scaffold_1199
Species: Klebsiella pneumoniae (100%)
2 1306 bp 55.74 20.33 94.64
NECEvent2014_4_3_scaffold_947 174_003_scaffold_947
Species: Peptostreptococcus anaerobius (100%)
2 1985 bp 37.38 8.84 88.41
NECEvent2014_4_3_scaffold_1207 174_003_scaffold_1207
Species: Klebsiella variicola CAG:634 (50%)
2 1288 bp 61.72 2.56 91.07
NECEvent2014_4_3_scaffold_1465 174_003_scaffold_1465
Species: Klebsiella variicola (100%)
2 1012 bp 58.20 3.56 88.04
NECEvent2014_4_3_scaffold_1210 174_003_scaffold_1210
Species: Klebsiella variicola (50%)
2 1279 bp 59.11 3.99 81.16
NECEvent2014_4_3_scaffold_960 174_003_scaffold_960
Species: Sutterella parvirubra (50%)
2 1905 bp 50.92 47.32 14.17
NECEvent2014_4_3_scaffold_1216 174_003_scaffold_1216
Species: Klebsiella pneumoniae (50%)
2 1264 bp 61.71 3.80 95.65
NECEvent2014_4_3_scaffold_1218 174_003_scaffold_1218
Species: Klebsiella variicola (50%)
2 1260 bp 52.54 7.62 95.24
NECEvent2014_4_3_scaffold_1475 174_003_scaffold_1475
Species: Klebsiella variicola CAG:634 (50%)
2 1006 bp 55.07 3.58 88.67
NECEvent2014_4_3_scaffold_967 174_003_scaffold_967
Species: Klebsiella pneumoniae (50%)
2 1882 bp 56.22 7.57 27.26
NECEvent2014_4_3_scaffold_1480 174_003_scaffold_1480
Species: Pluralibacter gergoviae (50%)
2 1004 bp 45.62 2.69 70.22
NECEvent2014_4_3_scaffold_969 174_003_scaffold_969
Species: Cronobacter sakazakii (50%)
2 1878 bp 51.76 13.42 68.05
NECEvent2014_4_3_scaffold_1481 174_003_scaffold_1481
Species: Klebsiella variicola (50%)
2 1003 bp 54.94 3.44 83.45
NECEvent2014_4_3_scaffold_1236 174_003_scaffold_1236
Species: Finegoldia magna (50%)
2 1238 bp 30.61 25.69 65.19
NECEvent2014_4_3_scaffold_1241 174_003_scaffold_1241
Species: Proteobacteria bacterium CAG:139 (50%)
2 1826 bp 45.02 19.72 87.24
NECEvent2014_4_3_scaffold_1242 174_003_scaffold_1242
Species: Pseudomonas sp. TJI-51 (50%)
2 1225 bp 56.08 3.43 89.63
NECEvent2014_4_3_scaffold_1245 174_003_scaffold_1245
Species: Klebsiella variicola (50%)
2 1216 bp 59.21 3.21 94.49
NECEvent2014_4_3_scaffold_738 174_003_scaffold_738
Species: Salmonella enterica (50%)
2 3322 bp 50.45 45.24 10.02
NECEvent2014_4_3_scaffold_994 174_003_scaffold_994
Species: Klebsiella variicola (50%)
2 1774 bp 53.83 3.04 96.39
NECEvent2014_4_3_scaffold_1000 174_003_scaffold_1000
Species: Pseudomonas sp. StFLB209 (50%)
2 1752 bp 50.23 5.31 93.15
NECEvent2014_4_3_scaffold_1266 174_003_scaffold_1266
Species: Klebsiella variicola (50%)
2 1194 bp 55.61 3.27 81.16
NECEvent2014_4_3_scaffold_1268 174_003_scaffold_1268
Species: Klebsiella variicola CAG:634 (50%)
2 1192 bp 60.57 4.28 91.86
NECEvent2014_4_3_scaffold_1269 174_003_scaffold_1269
Species: Citrobacter freundii (50%)
2 1191 bp 44.25 6.30 41.81
NECEvent2014_4_3_scaffold_1277 174_003_scaffold_1277
Species: Klebsiella variicola (50%)
2 1180 bp 50.17 4.32 49.83
NECEvent2014_4_3_scaffold_1282 174_003_scaffold_1282
Species: Klebsiella oxytoca (50%)
2 1174 bp 59.80 5.37 95.32
NECEvent2014_4_3_scaffold_1284 174_003_scaffold_1284
Species: Klebsiella variicola (100%)
2 1173 bp 62.40 3.32 97.95
NECEvent2014_4_3_scaffold_777 174_003_scaffold_777
Species: Peptoniphilus sp. oral taxon 836 (50%)
2 3054 bp 32.94 7.91 93.22
NECEvent2014_4_3_scaffold_1301 174_003_scaffold_1301
Species: Serratia odorifera (50%)
2 1157 bp 54.97 10.37 94.90
NECEvent2014_4_3_scaffold_1303 174_003_scaffold_1303
Species: Klebsiella pneumoniae (100%)
2 1155 bp 51.52 3.64 71.17
NECEvent2014_4_3_scaffold_1051 174_003_scaffold_1051
Species: Klebsiella pneumoniae (50%)
2 1620 bp 46.48 5.93 80.00
NECEvent2014_4_3_scaffold_1313 174_003_scaffold_1313
Species: Klebsiella variicola CAG:634 (50%)
2 1146 bp 59.86 3.66 100.26
NECEvent2014_4_3_scaffold_1064 174_003_scaffold_1064
Species: Klebsiella variicola (50%)
2 1570 bp 59.49 3.06 96.31
NECEvent2014_4_3_scaffold_1066 174_003_scaffold_1066
Species: Corynebacterium jeikeium (50%)
2 1566 bp 58.43 6.90 86.97
NECEvent2014_4_3_scaffold_1323 174_003_scaffold_1323
Species: Clostridium perfringens (100%)
2 1141 bp 19.46 8.41 56.53
NECEvent2014_4_3_scaffold_1069 174_003_scaffold_1069
Species: Oribacterium sp. oral taxon 108 (50%)
2 1558 bp 30.94 8.28 78.95
NECEvent2014_4_3_scaffold_1326 174_003_scaffold_1326
Species: Klebsiella variicola (50%)
2 1138 bp 55.89 3.43 88.84
NECEvent2014_4_3_scaffold_1329 174_003_scaffold_1329
Species: Klebsiella variicola (50%)
2 1135 bp 44.05 4.23 45.20
NECEvent2014_4_3_scaffold_1086 174_003_scaffold_1086
Species: Klebsiella variicola (50%)
2 1518 bp 48.55 2.77 57.71
NECEvent2014_4_3_scaffold_1092 174_003_scaffold_1092
Species: Klebsiella variicola (100%)
2 1503 bp 56.95 3.99 90.02
NECEvent2014_4_3_scaffold_1356 174_003_scaffold_1356
Species: Ruminococcus albus (50%)
2 1105 bp 34.84 21.18 92.04
NECEvent2014_4_3_scaffold_1360 174_003_scaffold_1360
Species: Klebsiella pneumoniae (50%)
2 1102 bp 59.98 3.54 95.01
NECEvent2014_4_3_scaffold_1363 174_003_scaffold_1363
Species: Mangrovibacter sp. MFB070 (50%)
2 1101 bp 54.22 4.90 97.28
NECEvent2014_4_3_scaffold_1111 174_003_scaffold_1111
Species: Klebsiella variicola (100%)
2 1444 bp 51.59 10.08 84.56
NECEvent2014_4_3_scaffold_1112 174_003_scaffold_1112
Species: Klebsiella pneumoniae (50%)
2 1444 bp 40.65 6.23 42.38
NECEvent2014_4_3_scaffold_1368 174_003_scaffold_1368
Species: Klebsiella variicola (100%)
2 1096 bp 54.20 4.11 83.76
NECEvent2014_4_3_scaffold_1378 174_003_scaffold_1378
Species: Klebsiella pneumoniae (50%)
2 1088 bp 56.80 3.86 87.96
NECEvent2014_4_3_scaffold_1380 174_003_scaffold_1380
Species: Klebsiella pneumoniae (100%)
2 1087 bp 57.13 3.86 85.83
NECEvent2014_4_3_scaffold_1381 174_003_scaffold_1381
Species: Veillonella sp. ACP1 (50%)
2 1087 bp 32.20 4430.45 97.15
NECEvent2014_4_3_scaffold_1126 174_003_scaffold_1126
Species: Chlamydia trachomatis (50%)
2 1428 bp 32.35 10.29 39.29
Displaying items 101-150 of 201 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.