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NECEvent2014_4_5_UNK

In projects: NECEvent2014_4_5

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.42 Longest contig: 13.46 Kbp Bin length: 926.56 Kbp GC content: 37.82 %
Contigs count: 344 Features count: 1197 rRNAs count: 5 tRNAs count: 46

Genome completeness

partial RP 0 / 55 BSCG 0 / 51 ASCG 2 / 38
Displaying items 201-250 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_5_scaffold_3113 174_005_scaffold_3113
Species: Citrobacter sp. MGH 55 (50%)
2 1541 bp 51.33 3.89 91.50
NECEvent2014_4_5_scaffold_4130 174_005_scaffold_4130
Species: Sutterella wadsworthensis CAG:135 (50%)
2 1050 bp 50.76 3.14 74.86
NECEvent2014_4_5_scaffold_3642 174_005_scaffold_3642
Species: Desulfitobacterium dehalogenans (50%)
2 1249 bp 35.71 27.26 100.16
NECEvent2014_4_5_scaffold_4147 174_005_scaffold_4147
Species: Enterobacter cloacae (50%)
2 1044 bp 48.56 2.30 65.80
NECEvent2014_4_5_scaffold_3901 174_005_scaffold_3901
Species: Finegoldia magna (100%)
2 1131 bp 35.54 9.55 100.00
NECEvent2014_4_5_scaffold_3646 174_005_scaffold_3646
Species: Enterobacter cloacae (50%)
2 1247 bp 54.77 3.61 95.51
NECEvent2014_4_5_scaffold_4150 174_005_scaffold_4150
Species: Campylobacter jejuni (50%)
2 1043 bp 40.27 5.32 62.13
NECEvent2014_4_5_scaffold_3393 174_005_scaffold_3393
Species: Klebsiella pneumoniae (50%)
2 1372 bp 54.23 2.62 59.04
NECEvent2014_4_5_scaffold_3394 174_005_scaffold_3394
Species: Enterobacter sp. 35683 (50%)
2 1372 bp 58.24 3.50 90.96
NECEvent2014_4_5_scaffold_2387 174_005_scaffold_2387
Species: Oceanobacillus picturae (50%)
2 2298 bp 35.29 44.65 88.51
NECEvent2014_4_5_scaffold_3397 174_005_scaffold_3397
Species: Enterobacter cloacae (100%)
2 1371 bp 51.35 2.63 94.53
NECEvent2014_4_5_scaffold_3656 174_005_scaffold_3656
Species: Lachnospiraceae bacterium M18-1 (50%)
2 1243 bp 33.79 3.14 80.13
NECEvent2014_4_5_scaffold_3913 174_005_scaffold_3913
Species: Enterobacter hormaechei (50%)
2 1128 bp 58.78 2.93 100.53
NECEvent2014_4_5_scaffold_3403 174_005_scaffold_3403
Species: Peptoclostridium difficile (50%)
2 1368 bp 58.48 4.71 100.66
NECEvent2014_4_5_scaffold_3407 174_005_scaffold_3407
Species: Lelliottia amnigena (50%)
2 1366 bp 55.78 2.64 90.04
NECEvent2014_4_5_scaffold_3152 174_005_scaffold_3152
Species: Alkaliphilus metalliredigens (100%)
2 1513 bp 46.93 3.57 89.23
NECEvent2014_4_5_scaffold_3409 174_005_scaffold_3409 2 1365 bp 24.32 2.86 17.80
NECEvent2014_4_5_scaffold_3417 174_005_scaffold_3417 2 1362 bp 28.12 7.27 15.35
NECEvent2014_4_5_scaffold_3163 174_005_scaffold_3163
Species: Lelliottia amnigena (50%)
2 1510 bp 57.62 2.58 95.96
NECEvent2014_4_5_scaffold_2923 174_005_scaffold_2923
Species: Olsenella profusa (50%)
2 1705 bp 58.01 4.40 64.05
NECEvent2014_4_5_scaffold_3166 174_005_scaffold_3166
Species: Salinicoccus halodurans (100%)
2 1508 bp 23.34 4.87 99.67
NECEvent2014_4_5_scaffold_3678 174_005_scaffold_3678
Species: Enterobacter aerogenes (50%)
2 1232 bp 49.84 2.68 99.35
NECEvent2014_4_5_scaffold_2670 174_005_scaffold_2670
Species: Pyramidobacter piscolens (50%)
2 1942 bp 23.07 3.63 64.42
NECEvent2014_4_5_scaffold_3167 174_005_scaffold_3167
Species: Lelliottia amnigena (50%)
2 1507 bp 58.86 2.59 99.93
NECEvent2014_4_5_scaffold_3425 174_005_scaffold_3425
Species: Finegoldia magna (50%)
2 1357 bp 28.96 13.60 97.27
NECEvent2014_4_5_scaffold_4185 174_005_scaffold_4185
Species: Peptostreptococcus sp. MV1 (50%)
2 1031 bp 28.32 46.56 82.35
NECEvent2014_4_5_scaffold_3686 174_005_scaffold_3686
Species: marine sediment metagenome (50%)
2 1228 bp 67.67 5.13 99.92
NECEvent2014_4_5_scaffold_4194 174_005_scaffold_4194
Species: Enterobacter sp. 35683 (50%)
2 1027 bp 45.86 2.78 64.26
NECEvent2014_4_5_scaffold_3949 174_005_scaffold_3949
Species: Enterobacter hormaechei (50%)
2 1109 bp 51.94 3.79 79.26
NECEvent2014_4_5_scaffold_3957 174_005_scaffold_3957
Species: Enterobacter sp. DC4 (50%)
2 1107 bp 55.56 3.93 100.27
NECEvent2014_4_5_scaffold_3966 174_005_scaffold_3966
Species: Lelliottia amnigena (50%)
2 1104 bp 55.89 3.53 92.39
NECEvent2014_4_5_scaffold_3456 174_005_scaffold_3456
Species: Synergistes jonesii (50%)
2 1341 bp 44.59 4.03 62.19
NECEvent2014_4_5_scaffold_1936 174_005_scaffold_1936
Species: Veillonella dispar (50%)
2 3051 bp 38.87 15.78 93.71
NECEvent2014_4_5_scaffold_3715 174_005_scaffold_3715
Species: Mogibacterium sp. CM50 (100%)
2 1210 bp 39.75 3.72 44.88
NECEvent2014_4_5_scaffold_3717 174_005_scaffold_3717
Species: Enterobacter asburiae (50%)
2 1210 bp 54.05 3.47 76.12
NECEvent2014_4_5_scaffold_3206 174_005_scaffold_3206 2 1489 bp 48.62 13.50 8.06
NECEvent2014_4_5_scaffold_3465 174_005_scaffold_3465
Species: Enterobacter sp. 35683 (100%)
2 1337 bp 51.46 3.14 98.95
NECEvent2014_4_5_scaffold_3469 174_005_scaffold_3469
Species: Cronobacter sakazakii (50%)
2 1336 bp 54.94 122.72 95.66
NECEvent2014_4_5_scaffold_2973 174_005_scaffold_2973
Species: Anoxybacillus sp. BCO1 (50%)
2 1650 bp 52.61 520.45 6.55
NECEvent2014_4_5_scaffold_2463 174_005_scaffold_2463
Species: Bifidobacterium breve (50%)
2 2196 bp 44.99 6.01 99.86
NECEvent2014_4_5_scaffold_3730 174_005_scaffold_3730
Species: Klebsiella variicola (100%)
2 1205 bp 53.28 94.85 97.10
NECEvent2014_4_5_scaffold_3987 174_005_scaffold_3987
Species: [Clostridium] sordellii (50%)
2 1098 bp 64.12 4.10 100.27
NECEvent2014_4_5_scaffold_2468 174_005_scaffold_2468
Species: Halomonas sp. R57-5 (50%)
2 2189 bp 26.50 4.59 100.59
NECEvent2014_4_5_scaffold_3734 174_005_scaffold_3734
Species: Actinomyces urogenitalis (50%)
2 1204 bp 64.37 35.88 76.50
NECEvent2014_4_5_scaffold_2470 174_005_scaffold_2470
Species: Peptoniphilus duerdenii (100%)
2 2186 bp 28.36 8.71 69.72
NECEvent2014_4_5_scaffold_2985 174_005_scaffold_2985
Species: Clostridiales bacterium S5-A11 (50%)
2 1638 bp 31.87 24.45 96.15
NECEvent2014_4_5_scaffold_3230 174_005_scaffold_3230
Species: Eggerthella lenta (50%)
2 1475 bp 49.76 4.88 88.07
NECEvent2014_4_5_scaffold_2990 174_005_scaffold_2990
Species: Hungatella hathewayi (50%)
2 1633 bp 49.36 6.43 103.43
NECEvent2014_4_5_scaffold_2996 174_005_scaffold_2996
Species: Escherichia coli (50%)
2 1625 bp 20.86 3.97 96.18
NECEvent2014_4_5_scaffold_4265 174_005_scaffold_4265
Species: Veillonella atypica (50%)
2 1000 bp 26.40 6.00 53.70
Displaying items 201-250 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.