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NECEvent2014_4_7_UNK

In projects: NECEvent2014_4_7

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.08 Longest contig: 22.98 Kbp Bin length: 883.64 Kbp GC content: 43.02 %
Contigs count: 316 Features count: 1097 rRNAs count: 3 tRNAs count: 11

Genome completeness

partial RP 1 / 55 BSCG 0 / 51 ASCG 3 / 38
Displaying items 201-250 of 316 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_7_scaffold_4735 174_007_scaffold_4735
Species: Enterococcus faecalis (100%)
2 1218 bp 37.11 2.22 100.25
NECEvent2014_4_7_scaffold_4224 174_007_scaffold_4224
Species: Haemophilus influenzae (100%)
2 1396 bp 43.12 6.02 95.63
NECEvent2014_4_7_scaffold_4994 174_007_scaffold_4994
Species: Brochothrix thermosphacta (50%)
2 1137 bp 25.59 4.22 82.06
NECEvent2014_4_7_scaffold_3729 174_007_scaffold_3729
Species: Bifidobacterium longum (50%)
2 1628 bp 44.84 3.87 100.25
NECEvent2014_4_7_scaffold_2450 174_007_scaffold_2450
Species: Anaerococcus vaginalis (50%)
2 2654 bp 27.54 4.69 99.13
NECEvent2014_4_7_scaffold_4489 174_007_scaffold_4489
Species: Anaerococcus hydrogenalis (50%)
2 1298 bp 25.04 4.85 77.66
NECEvent2014_4_7_scaffold_3990 174_007_scaffold_3990
Species: Klebsiella variicola (50%)
2 1493 bp 54.92 17.48 98.66
NECEvent2014_4_7_scaffold_3735 174_007_scaffold_3735
Species: Desulfosporosinus acidiphilus (50%)
2 1625 bp 40.49 4.52 89.72
NECEvent2014_4_7_scaffold_3993 174_007_scaffold_3993
Species: Streptococcus pseudoporcinus (50%)
2 1492 bp 29.42 4.83 100.54
NECEvent2014_4_7_scaffold_4497 174_007_scaffold_4497
Species: Syntrophomonas zehnderi (50%)
2 1297 bp 45.41 4.74 63.61
NECEvent2014_4_7_scaffold_5254 174_007_scaffold_5254
Species: Klebsiella pneumoniae (100%)
2 1061 bp 47.50 288.12 44.39
NECEvent2014_4_7_scaffold_4754 174_007_scaffold_4754
Species: Pantoea ananatis (50%)
2 1211 bp 55.24 301.24 89.93
NECEvent2014_4_7_scaffold_2210 174_007_scaffold_2210
Species: Anaerococcus hydrogenalis (50%)
2 2965 bp 37.10 9.76 68.20
NECEvent2014_4_7_scaffold_5516 174_007_scaffold_5516
Species: Enterococcus faecalis (50%)
2 1002 bp 46.71 613.92 31.04
NECEvent2014_4_7_scaffold_5262 174_007_scaffold_5262
Species: Haemophilus haemolyticus (50%)
2 1060 bp 39.81 4.10 88.87
NECEvent2014_4_7_scaffold_5520 174_007_scaffold_5520
Species: Yersinia mollaretii (50%)
2 1000 bp 55.90 5.85 89.70
NECEvent2014_4_7_scaffold_5522 174_007_scaffold_5522
Species: Eubacterium saphenum (50%)
2 1000 bp 25.30 4.50 75.30
NECEvent2014_4_7_scaffold_3499 174_007_scaffold_3499
Species: Klebsiella variicola (100%)
2 1751 bp 43.63 7.02 31.01
NECEvent2014_4_7_scaffold_5015 174_007_scaffold_5015
Species: Klebsiella pneumoniae (100%)
2 1131 bp 56.15 5.04 96.82
NECEvent2014_4_7_scaffold_3504 174_007_scaffold_3504
Species: Eggerthella lenta (100%)
2 1743 bp 52.73 2.50 100.17
NECEvent2014_4_7_scaffold_5274 174_007_scaffold_5274
Species: Anaerococcus vaginalis (100%)
2 1057 bp 25.45 5.96 98.20
NECEvent2014_4_7_scaffold_2486 174_007_scaffold_2486
Species: Bacillus thuringiensis (50%)
2 2609 bp 25.64 4.89 94.52
NECEvent2014_4_7_scaffold_4269 174_007_scaffold_4269
Species: Enterococcus faecalis (50%)
2 1378 bp 31.06 4.90 98.40
NECEvent2014_4_7_scaffold_4529 174_007_scaffold_4529
Species: Lachnospiraceae bacterium 8_1_57FAA (50%)
2 1287 bp 39.47 2.80 101.87
NECEvent2014_4_7_scaffold_4789 174_007_scaffold_4789
Species: Proteus mirabilis (50%)
2 1202 bp 53.33 8.74 85.36
NECEvent2014_4_7_scaffold_2755 174_007_scaffold_2755
Species: Eggerthella lenta (100%)
2 2317 bp 52.91 3.69 99.70
NECEvent2014_4_7_scaffold_2514 174_007_scaffold_2514
Species: Geobacillus sp. MAS1 (50%)
2 2575 bp 26.37 4.54 85.05
NECEvent2014_4_7_scaffold_2771 174_007_scaffold_2771
Species: Peptostreptococcaceae bacterium CM2 (50%)
2 2295 bp 31.72 5.88 93.59
NECEvent2014_4_7_scaffold_2773 174_007_scaffold_2773 2 2294 bp 59.42 75.20 7.59
NECEvent2014_4_7_scaffold_5309 174_007_scaffold_5309
Species: Enterococcus faecalis (50%)
2 1048 bp 32.73 4.29 83.30
NECEvent2014_4_7_scaffold_3288 174_007_scaffold_3288
Species: Salmonella enterica (50%)
2 1872 bp 38.14 5.05 92.79
NECEvent2014_4_7_scaffold_4046 174_007_scaffold_4046
Species: Anaerococcus tetradius (50%)
2 1468 bp 29.63 4.09 101.77
NECEvent2014_4_7_scaffold_3551 174_007_scaffold_3551
Species: Escherichia coli (50%)
2 1717 bp 61.44 6.64 81.60
NECEvent2014_4_7_scaffold_5327 174_007_scaffold_5327
Species: Haemophilus haemolyticus (50%)
2 1045 bp 42.49 4.31 95.31
NECEvent2014_4_7_scaffold_4059 174_007_scaffold_4059
Species: Peptoniphilus sp. oral taxon 375 (50%)
2 1464 bp 35.66 4.30 99.59
NECEvent2014_4_7_scaffold_4315 174_007_scaffold_4315
Species: Clostridiales bacterium S7-1-4 (50%)
2 1357 bp 27.71 4.64 89.54
NECEvent2014_4_7_scaffold_1773 174_007_scaffold_1773
Species: Morganella morganii (50%)
2 3722 bp 54.86 5.12 99.54
NECEvent2014_4_7_scaffold_2798 174_007_scaffold_2798
Species: Peptoniphilus sp. oral taxon 375 (50%)
2 2268 bp 34.48 5.03 88.62
NECEvent2014_4_7_scaffold_1266 174_007_scaffold_1266
Species: Finegoldia magna (50%)
2 5096 bp 37.40 7.54 95.43
NECEvent2014_4_7_scaffold_5338 174_007_scaffold_5338
Species: Enterococcus faecalis (100%)
2 1043 bp 39.31 2.88 93.48
NECEvent2014_4_7_scaffold_3060 174_007_scaffold_3060
Species: Klebsiella pneumoniae (50%)
2 2040 bp 54.95 4.49 96.62
NECEvent2014_4_7_scaffold_3573 174_007_scaffold_3573
Species: Klebsiella pneumoniae (50%)
2 1709 bp 40.61 8.25 72.67
NECEvent2014_4_7_scaffold_2806 174_007_scaffold_2806
Species: Escherichia coli (50%)
2 2255 bp 54.94 5.72 84.21
NECEvent2014_4_7_scaffold_3318 174_007_scaffold_3318
Species: Anaerococcus hydrogenalis (50%)
2 1852 bp 30.56 6.97 86.50
NECEvent2014_4_7_scaffold_2808 174_007_scaffold_2808
Species: Raoultella ornithinolytica (50%)
2 2252 bp 41.12 5.26 69.01
NECEvent2014_4_7_scaffold_4332 174_007_scaffold_4332
Species: Klebsiella variicola (50%)
2 1352 bp 40.68 6.43 70.78
NECEvent2014_4_7_scaffold_4590 174_007_scaffold_4590
Species: Klebsiella quasipneumoniae (100%)
2 1264 bp 29.19 4.39 96.12
NECEvent2014_4_7_scaffold_2818 174_007_scaffold_2818
Species: Klebsiella variicola (50%)
2 2245 bp 59.06 6.35 97.28
NECEvent2014_4_7_scaffold_3074 174_007_scaffold_3074
Species: Trichuris trichiura (50%)
2 2029 bp 47.17 41.77 27.80
NECEvent2014_4_7_scaffold_3849 174_007_scaffold_3849
Species: Peptoniphilus sp. 1-1 (50%)
2 1566 bp 49.43 203.07 16.28
Displaying items 201-250 of 316 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.