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NECEvent2014_5_2_scaffold_422_5

Organism: NECEvent2014_5_2_UNK

partial RP 0 / 55 BSCG 0 / 51 ASCG 1 / 38
Location: comp(7563..9611)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Escherichia coli 3006 RepID=K3IR22_ECOLX similarity UNIREF
DB: UNIREF100
  • Identity: 94.0
  • Coverage: 682.0
  • Bit_score: 1285
  • Evalue 0.0
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia similarity UNIPROT
DB: UniProtKB
  • Identity: 94.0
  • Coverage: 682.0
  • Bit_score: 1285
  • Evalue 0.0
putative RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 93.7
  • Coverage: 682.0
  • Bit_score: 1280
  • Evalue 0.0

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Taxonomy

Escherichia coli → Escherichia → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2049
ATGCATCGCTCTGTTTCTGAGTTTTATCGCATCCCCCCTCTACTTATTCGTGCGCTAAAAAGCGGAGTCGCCTCCGTGGTGGAGTTTCATCTCAGCAGGGGATTGCCGAAAGATTCACGAGATTCTCTGGGAAATAGCCCATTGATGATTGCGGCCCAGAATGGGCATTTCGCTATTTGCGAAATGTTGTTGTGCGCGGGTGTCGATGTTGAGCATCAAAACAACCTCGGGTTTCGCGCCAGTGACCTCGCGCAGGAGCAAACGCTGCGTGATCTGTTAGCTCGTTATCGGAAATCTCCTCCGTCTGCCGGGCAGCAACTAGCAGGGGGGTTAGATGATGAGGCAAACATTGAGGTTGTAATTGAAGCCGATGTTGAAACAGAACTACCCGAAACCGAAGACGCAATGGATTTTATGCAGTGGGATGCTGAAATCGAATCGGAACCCGCCGATGATAATCTGACATTACGACACGCTTCCGCTGAGGCTCAGCGATTGTTATCCCACTATCGCCCTATAGATAACGCGGCTGAGTGGATCGATATCGAACTCTCGCTTCCAGACCCGCCGACGCCAGTTTCTCACTCTCCGCAAAATTATCCCCATTTCTCAACGTTGCTCACTAGCGCACTGGATGCCGGTCGTGTCTCTGTTCGTGACATCCGGTCTGCCGGGGAAGATGATTTCGGCATGCCGTGGCCTGAATTCCAGGTCAGCGTAGAGGCATTGATCAAGGACTTACCTTTGATTGTGGATAGCGATGATGCTTTCCCGGAAAGTGATGCCTGTTGGGAATTAGCGGCGAGTGATGATCTCGAGCCCTGGTTTGACGCTTTCGGTGCATTGCGGCAGTCCGGCATATTTGAACGCTATCTTTTGGACATTCGCCAATGGGATGTCGTCGATAAAACAAAGGAAGAGCGACTCGGGCAGCGCATGGATACGGCGCTTATCAACTTGATGACGATCCTGGTGAGATTACCCGAAGCAGAATATCTACAGTTGCTGCATCCGAATTGCCTTCCCTCGACATCGCCTGAGGTTACTGAAGAGGAAGACGACGCGGAAGAAGCGGATGAGGATATTTCTTCCGCAGCCGATGACGATGACGCCATCACCTTTAACGATCTGCTCATTCTGCTGAGAAGTGGGAAAGCTGAAGAATACCAGGAGACTCACATCCCTCGCCCGGAGTACCGTGACCTGCAGCAGATAGTCGAGCGCGCCCAAACGCTCATCCCTGATGAATGCCACAAAGTCAGTCTTTATGTCAGTAGTTACAGAGACGCATGGGAGGGGTTAATCCACGCCAATTTACGTCTTGTGGTCGCGATTGCGAAAAAACACTGCGGGCGAGGATTAGATATCGAGGACCTGATACAGGAAGGTAATCTGGGCTTGATCAAGGCCGTTGAAAAATTCGACTATAGGCGTGGATTCAAATTCTCCACCTATGCCTCTTGGTGGATCCGCCAGAAGATTACCCGTGCGATTGCCGATCAGGCTCAGCTCATTCGTTTACCCGTTCACTTCTATGAGCAATTCAGGCGCTGGCGGAGCAGTAGGGATCAGTTGCTGCATCTCCAGGGGATAACGCCAACCCTCAGACGGTTGCAGGAAATGACCGACCTGCCAGAGCGTCAACTTCTTCAGATGGCTAAATATGAAGAACAGACGGTGCTGATTGGTGATTTTCATGACGACGCTCAGGACCGCGAAGCAGCATTGTCGGGAGACGCGCTGCTGACCAGATGGGATTTCACCAGTGCTCCCGTTCAGTCTCTGGAGATAAGAGAACATATTTCATCTGTTCTGAATACGCTGTTGCCACGCGAAACACAGATCATAAAAATGCGTTTTGGCATCGGTATGACGCAAGATTTCACGCTGGAAGAGGTGGGTAAACAGTTTGATGTCACGCGAGAAAGGATACGTCAGATAGAAGCCAAAGCGCTCCGTAAGCTCCGCTATCACAGCCGGGCGTCGAAATTAGGCGGCTTCGTCGAACAGTGGGAAACCGCGTTGAGCGAGATGCAGGAAGAAGAATGA
PROTEIN sequence
Length: 683
MHRSVSEFYRIPPLLIRALKSGVASVVEFHLSRGLPKDSRDSLGNSPLMIAAQNGHFAICEMLLCAGVDVEHQNNLGFRASDLAQEQTLRDLLARYRKSPPSAGQQLAGGLDDEANIEVVIEADVETELPETEDAMDFMQWDAEIESEPADDNLTLRHASAEAQRLLSHYRPIDNAAEWIDIELSLPDPPTPVSHSPQNYPHFSTLLTSALDAGRVSVRDIRSAGEDDFGMPWPEFQVSVEALIKDLPLIVDSDDAFPESDACWELAASDDLEPWFDAFGALRQSGIFERYLLDIRQWDVVDKTKEERLGQRMDTALINLMTILVRLPEAEYLQLLHPNCLPSTSPEVTEEEDDAEEADEDISSAADDDDAITFNDLLILLRSGKAEEYQETHIPRPEYRDLQQIVERAQTLIPDECHKVSLYVSSYRDAWEGLIHANLRLVVAIAKKHCGRGLDIEDLIQEGNLGLIKAVEKFDYRRGFKFSTYASWWIRQKITRAIADQAQLIRLPVHFYEQFRRWRSSRDQLLHLQGITPTLRRLQEMTDLPERQLLQMAKYEEQTVLIGDFHDDAQDREAALSGDALLTRWDFTSAPVQSLEIREHISSVLNTLLPRETQIIKMRFGIGMTQDFTLEEVGKQFDVTRERIRQIEAKALRKLRYHSRASKLGGFVEQWETALSEMQEEE*