ggKbase home page
Advanced Search
Search Help

NECEvent2014_5_2_UNK

In projects: NECEvent2014_5_2

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 31.87 Longest contig: 20.36 Kbp Bin length: 789.14 Kbp GC content: 46.37 %
Contigs count: 313 Features count: 998 rRNAs count: 4 tRNAs count: 28

Genome completeness

partial RP 0 / 55 BSCG 0 / 51 ASCG 1 / 38
Displaying items 201-250 of 313 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_2_scaffold_4862 175_001_scaffold_4862
Species: Propionibacterium sp. HGH0353 (100%)
2 1363 bp 62.88 18.93 85.40
NECEvent2014_5_2_scaffold_5753 175_001_scaffold_5753
Species: Enterobacter cloacae (50%)
2 1199 bp 55.46 17.76 88.07
NECEvent2014_5_2_scaffold_3331 175_001_scaffold_3331
Species: Corynebacterium imitans (50%)
2 1796 bp 55.18 6.68 75.84
NECEvent2014_5_2_scaffold_3078 175_001_scaffold_3078
Species: Klebsiella pneumoniae (50%)
2 1899 bp 52.76 11.69 79.78
NECEvent2014_5_2_scaffold_6014 175_001_scaffold_6014
Species: Enterobacter sp. 35730 (50%)
2 1153 bp 54.99 7.42 95.23
NECEvent2014_5_2_scaffold_5505 175_001_scaffold_5505
Species: Enterococcus faecalis (100%)
2 1244 bp 37.94 36.41 86.82
NECEvent2014_5_2_scaffold_4619 175_001_scaffold_4619
Species: Enterobacter sp. 35730 (100%)
2 1413 bp 46.36 30.15 52.02
NECEvent2014_5_2_scaffold_528 175_001_scaffold_528
Species: Campylobacter ureolyticus (100%)
2 8474 bp 24.72 13.68 99.30
NECEvent2014_5_2_scaffold_4885 175_001_scaffold_4885
Species: Ruminococcus sp. CAG:177 (50%)
2 1358 bp 55.82 6.63 86.82
NECEvent2014_5_2_scaffold_2585 175_001_scaffold_2585
Species: Dehalococcoides mccartyi (50%)
2 2160 bp 36.85 7.22 99.86
NECEvent2014_5_2_scaffold_3099 175_001_scaffold_3099
Species: Enterobacter cloacae (100%)
2 1890 bp 58.31 23.02 80.79
NECEvent2014_5_2_scaffold_4382 175_001_scaffold_4382
Species: Klebsiella pneumoniae (50%)
2 1472 bp 54.89 83.97 99.25
NECEvent2014_5_2_scaffold_4383 175_001_scaffold_4383
Species: Gardnerella vaginalis (100%)
2 1471 bp 59.89 5.20 90.75
NECEvent2014_5_2_scaffold_6295 175_001_scaffold_6295
Species: Escherichia coli (100%)
2 1112 bp 54.14 2496.99 99.82
NECEvent2014_5_2_scaffold_2592 175_001_scaffold_2592
Species: Escherichia coli (100%)
2 2156 bp 46.15 7.65 73.75
NECEvent2014_5_2_scaffold_6040 175_001_scaffold_6040
Species: Enterobacter sp. 35730 (50%)
2 1150 bp 58.43 13.43 91.04
NECEvent2014_5_2_scaffold_6554 175_001_scaffold_6554
Species: Klebsiella pneumoniae (50%)
2 1074 bp 54.38 26.26 68.99
NECEvent2014_5_2_scaffold_3619 175_001_scaffold_3619
Species: Clostridium baratii (100%)
2 1698 bp 34.69 115.46 99.82
NECEvent2014_5_2_scaffold_4134 175_001_scaffold_4134
Species: Finegoldia magna (100%)
2 1537 bp 39.95 12.30 99.15
NECEvent2014_5_2_scaffold_4904 175_001_scaffold_4904
Species: BJP_IG2102_Gammaproteobacteria_62_140 (50%)
2 1355 bp 43.32 4.87 46.72
NECEvent2014_5_2_scaffold_6304 175_001_scaffold_6304
Species: Enterobacter sp. 35730 (50%)
2 1110 bp 56.13 5.95 95.41
NECEvent2014_5_2_scaffold_6306 175_001_scaffold_6306
Species: Enterobacter cloacae (50%)
2 1109 bp 46.26 4.06 88.73
NECEvent2014_5_2_scaffold_1579 175_001_scaffold_1579
Species: Peptoniphilus sp. 1-1 (50%)
2 3140 bp 45.67 31.43 20.92
NECEvent2014_5_2_scaffold_3628 175_001_scaffold_3628
Species: Yersinia kristensenii (50%)
2 1694 bp 26.45 3.01 83.94
NECEvent2014_5_2_scaffold_6821 175_001_scaffold_6821
Species: Lactobacillus paracasei (50%)
2 1038 bp 55.20 4.34 97.98
NECEvent2014_5_2_scaffold_5798 175_001_scaffold_5798
Species: Enterobacter cloacae (100%)
2 1192 bp 60.32 17.74 96.39
NECEvent2014_5_2_scaffold_5039 175_001_scaffold_5039
Species: Enterobacter cloacae (50%)
2 1326 bp 57.84 5.66 95.02
NECEvent2014_5_2_scaffold_6577 175_001_scaffold_6577
Species: Enterobacter sp. 35730 (50%)
2 1071 bp 57.14 10.36 92.72
NECEvent2014_5_2_scaffold_2374 175_001_scaffold_2374
Species: Idiomarina sp. A28L (50%)
2 2296 bp 46.08 78.59 84.54
NECEvent2014_5_2_scaffold_4935 175_001_scaffold_4935
Species: Enterobacter cloacae (50%)
2 1350 bp 63.11 18.78 100.00
NECEvent2014_5_2_scaffold_5055 175_001_scaffold_5055
Species: Bacteroides intestinalis CAG:564 (50%)
2 1322 bp 26.55 4.99 101.21
NECEvent2014_5_2_scaffold_3656 175_001_scaffold_3656
Species: Peptoniphilus indolicus (50%)
2 1685 bp 27.00 6.41 99.88
NECEvent2014_5_2_scaffold_5827 175_001_scaffold_5827
Species: Negativicoccus succinicivorans (50%)
2 1187 bp 55.77 9.48 85.43
NECEvent2014_5_2_scaffold_5832 175_001_scaffold_5832
Species: Paenibacillus sp. D9 (50%)
2 1185 bp 58.57 6.08 92.91
NECEvent2014_5_2_scaffold_1874 175_001_scaffold_1874
Species: Curtobacterium flaccumfaciens (50%)
2 2768 bp 60.01 7.21 99.82
NECEvent2014_5_2_scaffold_2901 175_001_scaffold_2901
Species: Peptostreptococcaceae bacterium AS15 (50%)
2 1980 bp 28.43 6.67 25.15
NECEvent2014_5_2_scaffold_4182 175_001_scaffold_4182
Species: Providencia rettgeri (50%)
2 1524 bp 45.14 7.97 93.11
NECEvent2014_5_2_scaffold_4442 175_001_scaffold_4442
Species: Finegoldia magna (50%)
2 1455 bp 32.44 3.61 93.40
NECEvent2014_5_2_scaffold_6356 175_001_scaffold_6356
Species: [Clostridium] leptum (100%)
2 1102 bp 60.07 8.98 94.19
NECEvent2014_5_2_scaffold_2145 175_001_scaffold_2145
Species: Gottschalkia acidurici (50%)
2 2477 bp 29.15 6.12 94.83
NECEvent2014_5_2_scaffold_3682 175_001_scaffold_3682
Species: Enterobacter cloacae (100%)
2 1675 bp 49.67 7.97 70.03
NECEvent2014_5_2_scaffold_5086 175_001_scaffold_5086
Species: Enterobacter sp. 35730 (50%)
2 1317 bp 57.86 21.18 97.95
NECEvent2014_5_2_scaffold_4199 175_001_scaffold_4199
Species: Enterobacter asburiae (50%)
2 1519 bp 52.40 92.82 87.89
NECEvent2014_5_2_scaffold_5343 175_001_scaffold_5343
Species: Enterorhabdus caecimuris (50%)
2 1269 bp 49.25 3.78 98.82
NECEvent2014_5_2_scaffold_6625 175_001_scaffold_6625
Species: Enterobacter cloacae (50%)
2 1065 bp 41.03 5.92 59.72
NECEvent2014_5_2_scaffold_4970 175_001_scaffold_4970
Species: Enterobacter cloacae (50%)
2 1343 bp 39.31 6.14 49.14
NECEvent2014_5_2_scaffold_5091 175_001_scaffold_5091
Species: Cronobacter muytjensii (50%)
2 1316 bp 54.48 9.12 83.43
NECEvent2014_5_2_scaffold_5095 175_001_scaffold_5095
Species: Klebsiella variicola (50%)
2 1314 bp 59.28 5.71 99.77
NECEvent2014_5_2_scaffold_3188 175_001_scaffold_3188
Species: Enterobacter asburiae (50%)
2 1856 bp 41.92 7.52 85.83
NECEvent2014_5_2_scaffold_5100 175_001_scaffold_5100
Species: Enterobacter cloacae (50%)
2 1314 bp 53.81 6.96 91.78
Displaying items 201-250 of 313 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.