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NECEvent2014_3_3_scaffold_12_6

Organism: NECEvent2014_3_3_Paenibacillus_dendritiformis-rel_55_70

near complete RP 48 / 55 MC: 3 BSCG 51 / 51 MC: 3 ASCG 15 / 38 MC: 2
Location: comp(5296..5745)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SM10_9BACL similarity UNIREF
DB: UNIREF100
  • Identity: 87.9
  • Coverage: 149.0
  • Bit_score: 265
  • Evalue 2.40e-68
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EHQ59891.1}; TaxID=1131935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus de similarity UNIPROT
DB: UniProtKB
  • Identity: 87.9
  • Coverage: 149.0
  • Bit_score: 265
  • Evalue 3.40e-68
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 53.2
  • Coverage: 141.0
  • Bit_score: 165
  • Evalue 1.60e-38

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Taxonomy

Paenibacillus dendritiformis → Paenibacillus → Bacillales → Bacilli → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 450
ATGGATTTCGCCGATGAATGCACGCAAAATACCTTTCTCGAAGCAAGAAAGCAAATCTCCAAGTTAAAAACTCACCCGAATGTGGCGGGATGGCTGTTCACTACGGCCAGAAATTTTATTAACCTTTCCTTTCGAGCGATGTATCTGAAAAACAAGTATGAAGTTATCATGTCAGATGACATCAATGACCGGGTAGAATCGCGGAATAATGAAATCGATCAGATGATCGAAAACGCTGTCGATGTGGATGTTTTATATCATGAGGTGTTAACGAACTTGAGTCCAGGCGAATACGAGCTGTATGCGGATTATTATATAAAGAAAATGTCAATCGCGGATTTGACCCGCAAATACGATGTATCGGCTAATGCGATTACGACAAGAATTTACCGGGTAAATAAAAAAATCAGAAGCATTGTTCAGAGGCTTGTCGTGAGTCTTGATATTTGA
PROTEIN sequence
Length: 150
MDFADECTQNTFLEARKQISKLKTHPNVAGWLFTTARNFINLSFRAMYLKNKYEVIMSDDINDRVESRNNEIDQMIENAVDVDVLYHEVLTNLSPGEYELYADYYIKKMSIADLTRKYDVSANAITTRIYRVNKKIRSIVQRLVVSLDI*