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NECEvent2014_3_3_scaffold_269_14

Organism: NECEvent2014_3_3_Bifidobacterium_MSTE12-rel_59_9

near complete RP 52 / 55 MC: 6 BSCG 49 / 51 ASCG 14 / 38
Location: comp(20377..21540)

Top 3 Functional Annotations

Value Algorithm Source
rpoC; DNA-directed RNA polymerase subunit beta' RpoC (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 387.0
  • Bit_score: 767
  • Evalue 2.50e-219
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 387.0
  • Bit_score: 767
  • Evalue 1.20e-218
DNA-directed RNA polymerase subunit beta' n=7 Tax=Bifidobacterium RepID=D2Q603_BIFDB similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 387.0
  • Bit_score: 767
  • Evalue 8.70e-219

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Taxonomy

Bifidobacterium dentium → Bifidobacterium → Bifidobacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1164
TCCATGGATGTGCTCAACGACCTTGTCGCCCACGGTGTGGAAGAGGTCAAGGCCCGTTCCGTGCTGACCTGCGAATCCAAGCGTGGCGTGTGCGCCAAGTGCTACGGCTGGTCCCTGGCCACCAACAAGCTGGTGGACGTCGGCGAAGCCGTCGGCATCGTGGCTGCACAGTCCATCGGCGAGCCTGGTACCCAGCTGACGCTGCGTTCCTTCCACTCCGGCGGCGTCGCATCCGCTTCCGATATCACCCAGGGTCTCCCGCGTGTTACCGAGCTTTTCGAAGCCCGTACCCCGAAGGGCGAGGCTCCGATCGCCGAGTTCCCGGGCGTGGTGAAGGTCGAAGACACCGATCGCGGTCGTCAGGTCACCCTGAAGCCGGACGACGACTCCGTCGAGCCGATCGTCTACCCGGTGACCCGTCGCGCTCCGATGCTGGTCAAGGACGGCGATCATGTCGAAGCCGGCACCCAGCTCATCGAGGGTTCCGTGGATCCGAAGAAGATCCTGCGCATCCTCGGTCCGCGCGCCGCTCAGGTCAACATCGTGGAGGAAGTGCACACCGTGTACCGCTCCCAGGGCGTGGATATCCACGACAAGCACATCGAGGTCATCGTGCACCAGATGCTGCGTCGTATCACCGTGATCGACTCCGGCGACACCGACCTGCTGCCGGGCGAACTCGTGGACCAGGCACGCTTCAAGGCCGCCAACATGGAGGCCGTGAAGAACGGTGGCAAGCCGGCCGCCGGCCGTCCGGAGCTGATGGGCATCACCAAGGCTTCGCTGGCCACCGACTCCTGGCTGTCCGCGGCCTCCTTCCAGGAGACCACCCGCGTACTCACCGAAGCCGCCCTGAGCCAGAAGGTCGATGACCTCAAGGGCCTCAAGGAGAACGTCATCATCGGTAAGCTCATCCCGGCCGGTACGGGTCTCGCCCGCTATCGCAATGCCGTGGTCGAGCCCGACAAGGCCATCCGTGACACCATCTACCCGAACTTCGGTCTGGGTGGCGACGAAACGGGTGCCGACTTCGGCGACGCCGATCTGTCCGATGTGGACTTCTCCAACATCGACTTCGGTGATTTGAAGCTCGGCGACGACTTCAACCCGGATGACTTCCTCGACGATAACGGCGGTCAGATGGATCTGGGAGACACCCTCTGA
PROTEIN sequence
Length: 388
SMDVLNDLVAHGVEEVKARSVLTCESKRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRSFHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGVVKVEDTDRGRQVTLKPDDDSVEPIVYPVTRRAPMLVKDGDHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHTVYRSQGVDIHDKHIEVIVHQMLRRITVIDSGDTDLLPGELVDQARFKAANMEAVKNGGKPAAGRPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGTGLARYRNAVVEPDKAIRDTIYPNFGLGGDETGADFGDADLSDVDFSNIDFGDLKLGDDFNPDDFLDDNGGQMDLGDTL*