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SCN_Thiobacillus_184x_old

SCN-stock_Hydrogenophilales_64_193
In projects: SCN-stock

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_Unknown Curated version: SCN_Thiobacillus_184x

Properties

Avg. coverage: 193.11 Longest contig: 936.76 Kbp Bin length: 3.52 Mbp GC content: 64.26 %
Contigs count: 69 Features count: 3642 rRNAs count: 0 tRNAs count: 51

Genome completeness

near complete RP 52 / 55 MC: 4 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Displaying items 1-50 of 69 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cnbg_combo_scaffold_3747 Thio184_193
Species: Pseudomonas aeruginosa (55.56%)
9 5047 bp 67.03 231.05 65.33
cnbg_combo_scaffold_5650 Thio184_156
Order: Hydrogenophilales (83.33%)
6 5743 bp 58.70 230.54 73.50
cnbg_combo_scaffold_7490 Thio184_132
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (62.5%)
8 6237 bp 64.65 159.69 77.73
cnbg_combo_scaffold_3551 Thio184_168
Order: Burkholderiales (60%)
5 5532 bp 59.38 108.03 82.54
cnbg_combo_scaffold_1416 Thio184_68
Order: Hydrogenophilales (54.55%)
11 9659 bp 63.50 117.96 83.27
cnbg_combo_scaffold_1907 Thio184_104
Class: Betaproteobacteria (66.67%)
9 7375 bp 59.97 107.09 83.63
cnbg_combo_scaffold_1252 Thio184_26
Class: Betaproteobacteria (79.17%)
24 17876 bp 61.50 148.63 84.43
cnbg_combo_scaffold_687 Thio184_23
Phylum: Proteobacteria (54.55%)
33 22556 bp 60.83 150.82 85.09
cnbg_combo_scaffold_5225 Thio184_79
Species: CG_Hydro_01 (55.56%)
9 8777 bp 59.15 134.09 85.31
cnbg_combo_scaffold_2232 Thio184_124
Order: Hydrogenophilales (75%)
4 6425 bp 52.50 151.98 85.63
cnbg_combo_scaffold_394 Thio184_13
Class: Betaproteobacteria (56.1%)
41 41511 bp 62.02 230.04 85.74
cnbg_combo_scaffold_1747 Thio184_87
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
6 8005 bp 59.70 214.58 86.42
cnbg_combo_scaffold_1238 Thio184_29
Order: Hydrogenophilales (50%)
16 16068 bp 58.68 89.53 86.97
cnbg_combo_scaffold_1371 Thio184_16
Order: Hydrogenophilales (50%)
34 33697 bp 61.35 174.15 87.42
cnbg_combo_scaffold_4879 Thio184_178
Species: GWE1_Thiobacillus_62_9_curated (62.5%)
8 5295 bp 58.04 125.44 87.65
cnbg_combo_scaffold_3687 Thio184_133
Order: Hydrogenophilales (66.67%)
6 6203 bp 59.73 227.42 87.78
cnbg_combo_scaffold_4636 Thio184_161
Order: Hydrogenophilales (66.67%)
9 5627 bp 58.22 205.10 88.02
cnbg_combo_scaffold_3015 Thio184_75
Order: Hydrogenophilales (100%)
13 9148 bp 62.43 251.56 88.18
cnbg_combo_scaffold_4672 Thio184_149
Order: Hydrogenophilales (53.85%)
13 5949 bp 58.43 112.17 88.25
cnbg_combo_scaffold_2217 Thio184_61
Phylum: Proteobacteria (81.82%)
11 10455 bp 60.99 214.99 88.48
cnbg_combo_scaffold_600 Thio184_18
Class: Betaproteobacteria (80.77%)
26 27471 bp 61.63 159.09 88.58
cnbg_combo_scaffold_3681 Thio184_172
Class: Betaproteobacteria (100%)
4 5491 bp 60.70 213.28 88.73
cnbg_combo_scaffold_1300 Thio184_62
Genus: Methylibium (50%)
10 10449 bp 55.63 168.85 89.29
cnbg_combo_scaffold_504 Thio184_17
Order: Hydrogenophilales (81.25%)
32 32601 bp 64.84 189.06 89.89
cnbg_combo_scaffold_3348 Thio184_77
Order: Hydrogenophilales (58.33%)
12 8964 bp 61.72 241.58 90.16
cnbg_combo_scaffold_124 Thio184_10
Order: Hydrogenophilales (68.75%)
96 95035 bp 66.32 213.79 90.27
cnbg_combo_scaffold_586 Thio184_15
Class: Betaproteobacteria (77.78%)
36 35070 bp 62.32 116.68 90.41
cnbg_combo_scaffold_2645 Thio184_142
Class: Betaproteobacteria (85.71%)
7 6071 bp 56.58 149.30 90.58
cnbg_combo_scaffold_342 Thio184_11
Class: Betaproteobacteria (59.81%)
107 80222 bp 62.14 82.21 90.80
cnbg_combo_scaffold_1775 Thio184_80
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (69.23%)
13 8773 bp 59.43 255.40 91.06
cnbg_combo_scaffold_3438 Thio184_145
Phylum: Proteobacteria (77.78%)
9 5994 bp 59.66 121.25 91.39
cnbg_combo_scaffold_7649 Thio184_152
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 5855 bp 60.31 266.18 91.41
cnbg_combo_scaffold_2069 Thio184_111
Phylum: Proteobacteria (50%)
6 6864 bp 57.36 174.26 91.52
cnbg_combo_scaffold_2423 Thio184_144
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 6002 bp 60.86 245.17 91.62
cnbg_combo_scaffold_5420 Thio184_110
Order: Hydrogenophilales (75%)
8 6920 bp 59.25 217.77 92.12
cnbg_combo_scaffold_54 Thio184_8
Order: Hydrogenophilales (78.32%)
143 138391 bp 65.28 201.08 92.19
cnbg_combo_scaffold_108 Thio184_5
Order: Hydrogenophilales (84.88%)
205 200198 bp 65.57 209.84 92.33
cnbg_combo_scaffold_2932 Thio184_148
Species: Thiobacillus denitrificans (66.67%)
3 5956 bp 63.83 141.97 92.33
cnbg_combo_scaffold_1208 Thio184_50
Order: Hydrogenophilales (75%)
12 11353 bp 59.96 271.13 92.57
cnbg_combo_scaffold_2161 Thio184_118
Genus: Acidithiobacillus (50%)
8 6610 bp 64.18 196.40 92.59
cnbg_combo_scaffold_2488 Thio184_141
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (71.43%)
7 6077 bp 60.59 257.41 92.61
cnbg_combo_scaffold_158 Thio184_6
Order: Hydrogenophilales (71.43%)
168 155029 bp 64.49 187.08 92.85
cnbg_combo_scaffold_437 Thio184_14
Order: Hydrogenophilales (94.55%)
55 40061 bp 62.15 166.03 92.87
cnbg_combo_scaffold_381 Thio184_12
Phylum: Proteobacteria (75.51%)
49 42348 bp 64.11 128.59 93.14
cnbg_combo_scaffold_4 Thio184_2
Order: Hydrogenophilales (75.21%)
480 477774 bp 64.29 184.52 93.17
cnbg_combo_scaffold_114 Thio184_4
Order: Hydrogenophilales (68.72%)
211 220619 bp 66.20 212.54 93.25
cnbg_combo_scaffold_21 Thio184_3
Order: Hydrogenophilales (62.6%)
254 247887 bp 65.32 200.75 93.38
cnbg_combo_scaffold_734 Thio184_20
Order: Hydrogenophilales (74.07%)
27 25126 bp 63.35 179.76 93.60
cnbg_combo_scaffold_69 Thio184_7
Order: Hydrogenophilales (79.39%)
165 149801 bp 62.48 167.70 93.60
cnbg_combo_scaffold_1316 Thio184_59
Class: Betaproteobacteria (77.78%)
9 10614 bp 60.02 114.13 93.61
Displaying items 1-50 of 69 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.