ggKbase home page

ACD7_88_5 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
nusA; transcription termination factor nusa rbh KEGG
DB: KEGG
46.3 395.0 346 1.50e-92 hmo:HM1_2310
nusA; transcription termination factor nusa similarity KEGG
DB: KEGG
46.3 395.0 346 1.50e-92 hmo:HM1_2310
NusA antitermination factor n=3 Tax=Clostridium thermocellum RepID=A3DE47_CLOTH (db=UNIREF evalue=3.0e-91 bit_score=339.0 identity=49.21 coverage=80.8612440191388) similarity UNIREF
DB: UNIREF
49.21 80.86 339 3.00e-91 hmo:HM1_2310
seg (db=Seg db_id=seg from=405 to=417) iprscan interpro
DB: Seg
null null null null hmo:HM1_2310
seg (db=Seg db_id=seg from=128 to=139) iprscan interpro
DB: Seg
null null null null hmo:HM1_2310
seg (db=Seg db_id=seg from=76 to=100) iprscan interpro
DB: Seg
null null null null hmo:HM1_2310
NusA: transcription termination factor NusA (db=HMMTigr db_id=TIGR01953 from=16 to=390 evalue=3.3e-138 interpro_id=IPR010213 interpro_description=Transcription termination factor NusA GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: transcription regulator activity (GO:0030528)) iprscan interpro
DB: HMMTigr
null null null 3.30e-138 hmo:HM1_2310
TRANSCRIPTION TERMINATION FACTOR NUSA (db=HMMPanther db_id=PTHR22648 from=8 to=385 evalue=6.7e-103) iprscan interpro
DB: HMMPanther
null null null 6.70e-103 hmo:HM1_2310
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=246 to=323 evalue=3.2e-32 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: superfamily
null null null 3.20e-32 hmo:HM1_2310
no description (db=Gene3D db_id=G3DSA:3.30.1480.10 from=18 to=196 evalue=2.2e-29 interpro_id=IPR013735 interpro_description=Transcription factor NusA, N-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription termination (GO:0031554)) iprscan interpro
DB: Gene3D
null null null 2.20e-29 hmo:HM1_2310
NusA_N (db=HMMPfam db_id=PF08529 from=16 to=171 evalue=5.8e-29 interpro_id=IPR013735 interpro_description=Transcription factor NusA, N-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription termination (GO:0031554)) iprscan interpro
DB: HMMPfam
null null null 5.80e-29 hmo:HM1_2310
no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=260 to=338 evalue=8.8e-29 interpro_id=IPR015946 interpro_description=K homology-like, alpha/beta) iprscan interpro
DB: Gene3D
null null null 8.80e-29 hmo:HM1_2310
Transcription factor NusA, N-terminal domain (db=superfamily db_id=SSF69705 from=13 to=173 evalue=1.4e-26 interpro_id=IPR013735 interpro_description=Transcription factor NusA, N-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription termination (GO:0031554)) iprscan interpro
DB: superfamily
null null null 1.40e-26 hmo:HM1_2310
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=178 to=245 evalue=7.3e-19 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like) iprscan interpro
DB: superfamily
null null null 7.30e-19 hmo:HM1_2310
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=197 to=259 evalue=3.6e-18 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold) iprscan interpro
DB: Gene3D
null null null 3.60e-18 hmo:HM1_2310
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=325 to=391 evalue=7.7e-18 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: superfamily
null null null 7.70e-18 hmo:HM1_2310
no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=339 to=391 evalue=5.4e-14 interpro_id=IPR015946 interpro_description=K homology-like, alpha/beta) iprscan interpro
DB: Gene3D
null null null 5.40e-14 hmo:HM1_2310
no description (db=HMMSmart db_id=SM00316 from=180 to=246 evalue=3.3e-09) iprscan interpro
DB: HMMSmart
null null null 3.30e-09 hmo:HM1_2310
S1 (db=HMMPfam db_id=PF00575 from=179 to=239 evalue=1.2e-08 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMPfam
null null null 1.20e-08 hmo:HM1_2310
no description (db=HMMSmart db_id=SM00322 from=276 to=349 evalue=0.63 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMSmart
null null null 6.30e-01 hmo:HM1_2310
no description (db=HMMSmart db_id=SM00322 from=350 to=407 evalue=1.1 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMSmart
null null null 1.10e+00 hmo:HM1_2310
KH_TYPE_1 (db=ProfileScan db_id=PS50084 from=349 to=385 evalue=8.659 interpro_id=IPR004088 interpro_description=K Homology, type 1 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
null null null 8.66e+00 hmo:HM1_2310
S1 (db=ProfileScan db_id=PS50126 from=182 to=246 evalue=12.192 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
null null null 1.22e+01 hmo:HM1_2310
cth:Cthe_0994 NusA antitermination factor; K02600 N utilization substance protein A alias=ACD7_1409.66734.79_5,ACD7_1409.66734.79G0005,ACD7_C00088G00005 id=130648 tax=ACD7 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1-i organism_desc=OD1-i similarity UNIREF
DB: UNIREF90
100.0 null 802 8.20e-230 hmo:HM1_2310
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" UNIPROT
DB: UniProtKB
100.0 417.0 802 2.80e-229 K2FKB9_9BACT