Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
RpoD subfamily RNA polymerase sigma-70 subunit | rbh |
KEGG
DB: KEGG |
56.8 | 368.0 | 401 | 3.30e-109 | ttm:Tthe_2012 |
RpoD subfamily RNA polymerase sigma-70 subunit | similarity |
KEGG
DB: KEGG |
56.8 | 368.0 | 401 | 3.30e-109 | ttm:Tthe_2012 |
RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1Z3_NATTJ (db=UNIREF evalue=9.0e-107 bit_score=390.0 identity=57.07 coverage=73.8396624472574) | similarity |
UNIREF
DB: UNIREF |
57.07 | 73.84 | 390 | 9.00e-107 | ttm:Tthe_2012 |
seg (db=Seg db_id=seg from=178 to=194) | iprscan |
interpro
DB: Seg |
null | null | null | null | ttm:Tthe_2012 |
coiled-coil (db=Coil db_id=coil from=60 to=81 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | ttm:Tthe_2012 |
seg (db=Seg db_id=seg from=31 to=84) | iprscan |
interpro
DB: Seg |
null | null | null | null | ttm:Tthe_2012 |
coiled-coil (db=Coil db_id=coil from=135 to=156 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | ttm:Tthe_2012 |
SIGMA70_2 (db=PatternScan db_id=PS00716 from=435 to=461 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | ttm:Tthe_2012 |
SIGMA70_1 (db=PatternScan db_id=PS00715 from=265 to=278 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | ttm:Tthe_2012 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=200 to=311 evalue=1.1e-51 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.10e-51 | ttm:Tthe_2012 |
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=129 to=310 evalue=2.9e-51) | iprscan |
interpro
DB: Gene3D |
null | null | null | 2.90e-51 | ttm:Tthe_2012 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=414 to=426 evalue=1.4e-29 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 1.40e-29 | ttm:Tthe_2012 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=435 to=450 evalue=1.4e-29 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 1.40e-29 | ttm:Tthe_2012 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=265 to=278 evalue=1.4e-29 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 1.40e-29 | ttm:Tthe_2012 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=289 to=297 evalue=1.4e-29 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 1.40e-29 | ttm:Tthe_2012 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=450 to=461 evalue=1.4e-29 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 1.40e-29 | ttm:Tthe_2012 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=234 to=465 evalue=1.7e-27 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 1.70e-27 | ttm:Tthe_2012 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=396 to=473 evalue=3.5e-22 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 3.50e-22 | ttm:Tthe_2012 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=314 to=389 evalue=3.8e-22 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 3.80e-22 | ttm:Tthe_2012 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=372 to=465 evalue=5.6e-22 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 5.60e-22 | ttm:Tthe_2012 |
Sigma70_r3 (db=HMMPfam db_id=PF04539 from=320 to=397 evalue=8.7e-22 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 8.70e-22 | ttm:Tthe_2012 |
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=239 to=311 evalue=9.9e-22 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 9.90e-22 | ttm:Tthe_2012 |
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=411 to=463 evalue=8.1e-18 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 8.10e-18 | ttm:Tthe_2012 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=314 to=365 evalue=7.1e-17 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 7.10e-17 | ttm:Tthe_2012 |
Sigma70_r1_2 (db=HMMPfam db_id=PF00140 from=200 to=232 evalue=7.6e-15 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 7.60e-15 | ttm:Tthe_2012 |
Sigma70_r1_1 (db=HMMPfam db_id=PF03979 from=111 to=175 evalue=6.2e-08 interpro_id=IPR007127 interpro_description=RNA polymerase sigma factor 70, region 1.1 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription regulator activity (GO:0030528), Biological Process: regulation of transcription (GO:0045449)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 6.20e-08 | ttm:Tthe_2012 |
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" |
UNIPROT
DB: UniProtKB |
100.0 | 473.0 | 906 | 2.10e-260 | K2ERL5_9BACT | |
ttm:Tthe_2012 RNA polymerase, sigma 70 subunit, RpoD subfamily; K03086 RNA polymerase primary sigma factor alias=ACD7_24.9284.77G0002,ACD7_24.9284.77_2,ACD7_C00119G00002 id=130896 tax=ACD7 species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1-i organism_desc=OD1-i | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 905 | 6.00e-261 | ttm:Tthe_2012 |