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NECEvent2014_7_3_UNK

In projects: NECEvent2014_7_3

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 37.95 Longest contig: 15.29 Kbp Bin length: 810.69 Kbp GC content: 49.20 %
Contigs count: 400 Features count: 1172 rRNAs count: 2 tRNAs count: 9

Genome completeness

partial RP 0 / 55 BSCG 0 / 51 ASCG 1 / 38
Displaying items 251-300 of 400 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_7_3_scaffold_3405 177_003_scaffold_3405
Species: Salmonella enterica (50%)
2 1465 bp 42.39 5.94 91.95
NECEvent2014_7_3_scaffold_4926 177_003_scaffold_4926
Species: Pseudomonas aeruginosa (50%)
2 1015 bp 37.64 3.55 32.51
NECEvent2014_7_3_scaffold_4416 177_003_scaffold_4416
Species: Citrobacter freundii (50%)
2 1122 bp 46.17 4.55 58.29
NECEvent2014_7_3_scaffold_3922 177_003_scaffold_3922
Species: Enterobacter sp. 35683 (100%)
2 1256 bp 59.24 5.25 98.89
NECEvent2014_7_3_scaffold_4931 177_003_scaffold_4931
Species: Klebsiella pneumoniae (100%)
2 1014 bp 58.97 276.63 94.08
NECEvent2014_7_3_scaffold_2645 177_003_scaffold_2645
Species: Paracoccus halophilus (50%)
2 2028 bp 45.76 6.21 96.30
NECEvent2014_7_3_scaffold_3157 177_003_scaffold_3157
Species: Enterobacter cloacae (100%)
2 1602 bp 41.45 5.06 50.75
NECEvent2014_7_3_scaffold_4934 177_003_scaffold_4934
Species: Lelliottia amnigena (100%)
2 1013 bp 50.64 4.15 76.11
NECEvent2014_7_3_scaffold_4425 177_003_scaffold_4425
Species: Lelliottia amnigena (50%)
2 1119 bp 43.07 4.56 97.05
NECEvent2014_7_3_scaffold_4937 177_003_scaffold_4937
Species: Escherichia coli (100%)
2 1012 bp 52.47 9.78 100.20
NECEvent2014_7_3_scaffold_3929 177_003_scaffold_3929
Species: Enterobacter cloacae (50%)
2 1254 bp 50.08 15.07 53.83
NECEvent2014_7_3_scaffold_3674 177_003_scaffold_3674
Species: Enterobacter cloacae (50%)
2 1349 bp 43.22 17.68 46.70
NECEvent2014_7_3_scaffold_1883 177_003_scaffold_1883
Species: Shigella boydii (50%)
2 3102 bp 37.65 15.38 55.13
NECEvent2014_7_3_scaffold_3419 177_003_scaffold_3419
Species: Enterobacter cloacae (50%)
2 1458 bp 51.71 3.29 99.59
NECEvent2014_7_3_scaffold_3932 177_003_scaffold_3932
Species: Citrobacter sp. CIP 55.13 (50%)
2 1253 bp 54.19 6.46 100.56
NECEvent2014_7_3_scaffold_4686 177_003_scaffold_4686
Species: Finegoldia magna (50%)
2 1069 bp 24.51 3.65 62.86
NECEvent2014_7_3_scaffold_2654 177_003_scaffold_2654
Species: Escherichia coli (50%)
2 2022 bp 40.11 6.23 100.15
NECEvent2014_7_3_scaffold_4690 177_003_scaffold_4690
Species: Escherichia coli (50%)
2 1068 bp 52.72 5.06 87.64
NECEvent2014_7_3_scaffold_2660 177_003_scaffold_2660
Species: Klebsiella pneumoniae (50%)
2 2015 bp 33.85 4.32 93.80
NECEvent2014_7_3_scaffold_3940 177_003_scaffold_3940
Species: Salmonella enterica (50%)
2 1249 bp 47.00 4.80 39.87
NECEvent2014_7_3_scaffold_3685 177_003_scaffold_3685
Species: Escherichia coli (50%)
2 1342 bp 58.49 12.41 97.69
NECEvent2014_7_3_scaffold_4695 177_003_scaffold_4695
Species: Enterobacter cloacae (50%)
2 1067 bp 48.64 15.18 76.76
NECEvent2014_7_3_scaffold_3944 177_003_scaffold_3944
Species: Enterobacter cloacae (50%)
2 1248 bp 58.41 4.81 97.84
NECEvent2014_7_3_scaffold_4699 177_003_scaffold_4699
Species: Providencia rettgeri (100%)
2 1066 bp 44.47 2.25 95.97
NECEvent2014_7_3_scaffold_3947 177_003_scaffold_3947
Species: Selenomonas flueggei (50%)
2 1247 bp 32.48 4.33 76.74
NECEvent2014_7_3_scaffold_3949 177_003_scaffold_3949
Species: Enterobacter sp. 35699 (50%)
2 1246 bp 49.60 9.27 52.01
NECEvent2014_7_3_scaffold_3183 177_003_scaffold_3183
Species: Klebsiella pneumoniae (100%)
2 1591 bp 55.63 6.60 93.71
NECEvent2014_7_3_scaffold_3695 177_003_scaffold_3695
Species: Citrobacter freundii (50%)
2 1337 bp 53.03 2.69 94.24
NECEvent2014_7_3_scaffold_3952 177_003_scaffold_3952
Species: Citrobacter freundii (50%)
2 1245 bp 52.61 6.14 82.41
NECEvent2014_7_3_scaffold_4193 177_003_scaffold_4193
Species: Citrobacter freundii (50%)
2 1178 bp 56.37 18.46 100.34
NECEvent2014_7_3_scaffold_2930 177_003_scaffold_2930
Species: Leclercia adecarboxylata (100%)
2 1771 bp 52.46 7.11 96.56
NECEvent2014_7_3_scaffold_4964 177_003_scaffold_4964
Species: Shewanella decolorationis (50%)
2 1007 bp 60.48 5.66 100.10
NECEvent2014_7_3_scaffold_2935 177_003_scaffold_2935
Species: Enterobacter cloacae (100%)
2 1767 bp 64.35 12.73 100.17
NECEvent2014_7_3_scaffold_3195 177_003_scaffold_3195
Species: Escherichia coli (50%)
2 1584 bp 43.62 37.12 72.16
NECEvent2014_7_3_scaffold_3454 177_003_scaffold_3454
Species: Lachnospiraceae bacterium COE1 (50%)
2 1446 bp 34.37 4.88 98.76
NECEvent2014_7_3_scaffold_4464 177_003_scaffold_4464
Species: Citrobacter sp. MGH 55 (50%)
2 1111 bp 38.52 2.43 79.12
NECEvent2014_7_3_scaffold_4209 177_003_scaffold_4209
Species: Citrobacter freundii (50%)
2 1174 bp 53.92 6.64 68.74
NECEvent2014_7_3_scaffold_4210 177_003_scaffold_4210
Species: Enterobacter cloacae (50%)
2 1174 bp 53.15 21.47 79.22
NECEvent2014_7_3_scaffold_4466 177_003_scaffold_4466
Species: Lelliottia amnigena (100%)
2 1111 bp 46.26 4.05 83.17
NECEvent2014_7_3_scaffold_3203 177_003_scaffold_3203
Species: Salmonella enterica (50%)
2 1578 bp 52.60 7.41 84.22
NECEvent2014_7_3_scaffold_4981 177_003_scaffold_4981
Species: Enterobacter cloacae (50%)
2 1004 bp 60.16 13.45 80.98
NECEvent2014_7_3_scaffold_2181 177_003_scaffold_2181
Species: Klebsiella pneumoniae (100%)
2 2618 bp 41.33 110.52 82.28
NECEvent2014_7_3_scaffold_3975 177_003_scaffold_3975
Species: Citrobacter freundii (50%)
2 1239 bp 53.51 16.95 100.00
NECEvent2014_7_3_scaffold_3467 177_003_scaffold_3467
Species: Staphylococcus cohnii (50%)
2 1441 bp 30.53 5.73 61.83
NECEvent2014_7_3_scaffold_3723 177_003_scaffold_3723
Species: Citrobacter amalonaticus (100%)
2 1327 bp 46.12 2.83 64.66
NECEvent2014_7_3_scaffold_2956 177_003_scaffold_2956
Species: Streptococcus sp. M334 (50%)
2 1747 bp 30.57 3.26 94.28
NECEvent2014_7_3_scaffold_4989 177_003_scaffold_4989
Species: Citrobacter amalonaticus (50%)
2 1002 bp 56.09 4.19 98.20
NECEvent2014_7_3_scaffold_2192 177_003_scaffold_2192
Species: Enterobacter cloacae (50%)
2 2603 bp 47.06 28.01 92.09
NECEvent2014_7_3_scaffold_4738 177_003_scaffold_4738
Species: Enterobacter cloacae (100%)
2 1059 bp 59.77 16.43 98.30
NECEvent2014_7_3_scaffold_3732 177_003_scaffold_3732
Species: Citrobacter freundii (50%)
2 1324 bp 51.13 5.55 97.21
Displaying items 251-300 of 400 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.