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NECEvent2014_3_4_scaffold_252

Alias: 173_002_scaffold_252

Search features with annotation key words

Displaying items 31-49 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_4_scaffold_252_31
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15214..16161
DNA (948bp) protein (316aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=4 Tax=Clostridium butyricum RepID=B1QYE2_CLOBU rbh
NECEvent2014_3_4_scaffold_252_32
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16174..16515
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=4 Tax=Clostridium butyricum RepID=B1QYE1_CLOBU
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rplQ; 50S ribosomal protein L17
NECEvent2014_3_4_scaffold_252_33
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16805..17668
DNA (864bp) protein (288aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-
ecfA1; energy-coupling factor transporter ATP-binding protein EcfA1 (EC:3.6.3.-)
Cobalt import ATP-binding protein CbiO 2 n=2 Tax=Clostridium butyricum RepID=M8JG87_CLOBU rbh
NECEvent2014_3_4_scaffold_252_34
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17644..18516
DNA (873bp) protein (291aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-
ecfA2; energy-coupling factor transporter ATP-binding protein EcfA2 (EC:3.6.3.-)
Cobalt import ATP-binding protein CbiO 1 n=4 Tax=Clostridium butyricum RepID=B1QYD9_CLOBU rbh
NECEvent2014_3_4_scaffold_252_35
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18519..19322
DNA (804bp) protein (268aa)
Energy-coupling factor transporter transmembrane protein EcfT n=4 Tax=Clostridium butyricum RepID=B1QYD8_CLOBU rbh
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=997898 species="Bacter
cobalt ABC transporter permease
NECEvent2014_3_4_scaffold_252_36
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19558..20292
DNA (735bp) protein (245aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridy
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=4 Tax=Clostridium butyricum RepID=B1QYD7_CLOBU rbh
NECEvent2014_3_4_scaffold_252_37
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20453..20887
DNA (435bp) protein (145aa)
50S ribosomal protein L13 n=3 Tax=Clostridium butyricum RepID=C4IF20_CLOBU
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
rplM; 50S ribosomal protein L13
NECEvent2014_3_4_scaffold_252_38
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20913..21305
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=3 Tax=Clostridium butyricum RepID=C4IF19_CLOBU
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source=
rpsI; 30S ribosomal protein S9
NECEvent2014_3_4_scaffold_252_39
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21708..23324
DNA (1617bp) protein (539aa)
Na/Pi-cotransporter family protein/PhoU family protein n=2 Tax=Clostridium butyricum RepID=M8JEW7_CLOBU rbh
Na/Pi-cotransporter family protein/PhoU family protein {ECO:0000313|EMBL:EEP55566.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clos
Na/Pi-cotransporter family protein/PhoU family protein
NECEvent2014_3_4_scaffold_252_40
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23514..24170
DNA (657bp) protein (219aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:KJZ87152.1}; EC=3.5.1.28 {ECO:0000313|EMBL:KJZ87152.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Cl
cwlD; N-acetylmuramoyl-L-alanine amidase CwlD (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase CwlD n=2 Tax=Clostridium butyricum RepID=M8K1K5_CLOBU rbh
NECEvent2014_3_4_scaffold_252_41
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24664..25506
DNA (843bp) protein (281aa)
Fumarate hydratase tartrate dehydratase alpha subunit {ECO:0000313|EMBL:KJZ87137.1}; EC=4.2.1.32 {ECO:0000313|EMBL:KJZ87137.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales;
fumA; fumarate hydratase alpha subunit FumA (EC:4.2.1.2)
Hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YSB4_CLOBU rbh
NECEvent2014_3_4_scaffold_252_42
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25566..26123
DNA (558bp) protein (186aa)
fumB; fumarate hydratase class I, anaerobic (EC:4.2.1.2)
Fumarate hydratase, class I n=4 Tax=Clostridium butyricum RepID=B1QZU5_CLOBU rbh
Hydrolyase, tartrate beta subunit/fumarate domain-containing protein, Fe-S type {ECO:0000313|EMBL:ENZ30507.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Cl
NECEvent2014_3_4_scaffold_252_43
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26353..27216)
DNA (864bp) protein (288aa)
Transporter n=4 Tax=Clostridium butyricum RepID=B1QZU6_CLOBU rbh
Putative membrane protein {ECO:0000313|EMBL:EEP55636.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoN
ypjC; UPF0750 membrane protein YpjC
NECEvent2014_3_4_scaffold_252_44
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27665..28396
DNA (732bp) protein (244aa)
TPR protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JEW1_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30509.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
TPR repeat-containing protein
NECEvent2014_3_4_scaffold_252_45
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28459..29151
DNA (693bp) protein (231aa)
Regulatory protein VanR n=4 Tax=Clostridium butyricum RepID=B1QZU8_CLOBU rbh
PhoB family transcriptional regulator {ECO:0000313|EMBL:KHD14845.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;
two component transcriptional regulator
NECEvent2014_3_4_scaffold_252_46
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29123..30475
DNA (1353bp) protein (451aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" s
walK; sensor protein kinase WalK (EC:2.7.13.3)
UPI0003D5D885 related cluster n=1 Tax=unknown RepID=UPI0003D5D885 rbh
NECEvent2014_3_4_scaffold_252_47
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30672..32903
DNA (2232bp) protein (744aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiacea
nrdA; ribonucleoside-diphosphate reductase subunit alpha (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=2 Tax=Clostridium butyricum RepID=M8J5Z7_CLOBU rbh
NECEvent2014_3_4_scaffold_252_48
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32956..34161
DNA (1206bp) protein (402aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales;
nrdB; ribonucleoside-diphosphate reductase subunit beta (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta n=2 Tax=Clostridium butyricum RepID=M8JG76_CLOBU rbh
NECEvent2014_3_4_scaffold_252_49
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34387..36006
DNA (1620bp) protein (540aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=
ptsI; phosphoenolpyruvate-protein phosphotransferase PtsI (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=4 Tax=Clostridium butyricum RepID=B1QZV3_CLOBU rbh
Displaying items 31-49 of 49 in total

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