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NECEvent2014_9_1_Candida_parapsilosis_39_137

NECEvent2014_9_1_Candida_parapsilosis_39_129
In projects: NECEvent2014_9_1

Consensus taxonomy: Candida parapsilosis  →  Candida  →  Saccharomycetales  →  Saccharomycetes  →  Ascomycota  →  Fungi

Taxonomy override: Eukaryote

Description

Bin incl. rRNA 100% identity to Candida parapsilosis strain CDC317. 16s rRNA also in Mitochondria bin

Displaying items 301-350 of 405 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_9_1_scaffold_539 182_001_scaffold_539
Species: Candida parapsilosis (50%)
4 3289 bp 39.01 141.93 38.40
NECEvent2014_9_1_scaffold_1077 182_001_scaffold_1077
Species: Candida parapsilosis (66.67%)
3 1497 bp 38.34 138.48 42.89
NECEvent2014_9_1_scaffold_589 182_001_scaffold_589
Species: Candida parapsilosis (100%)
3 3446 bp 38.57 141.64 56.41
NECEvent2014_9_1_scaffold_590 182_001_scaffold_590
Species: Candida parapsilosis (66.67%)
3 2880 bp 39.93 126.98 44.58
NECEvent2014_9_1_scaffold_846 182_001_scaffold_846
Species: Candida parapsilosis (66.67%)
3 2768 bp 38.40 169.83 46.50
NECEvent2014_9_1_scaffold_337 182_001_scaffold_337
Species: Candida parapsilosis (66.67%)
3 10357 bp 39.43 138.49 93.47
NECEvent2014_9_1_scaffold_348 182_001_scaffold_348
Species: Candida parapsilosis (100%)
3 9478 bp 38.15 124.82 40.26
NECEvent2014_9_1_scaffold_349 182_001_scaffold_349
Species: Candida parapsilosis (66.67%)
3 9443 bp 40.26 128.67 46.92
NECEvent2014_9_1_scaffold_862 182_001_scaffold_862
Species: Candida parapsilosis (66.67%)
3 1901 bp 41.45 253.13 68.17
NECEvent2014_9_1_scaffold_358 182_001_scaffold_358
Species: Candida parapsilosis (100%)
3 8888 bp 39.53 136.70 61.94
NECEvent2014_9_1_scaffold_618 182_001_scaffold_618
Species: Candida parapsilosis (66.67%)
3 2691 bp 37.53 129.15 54.96
NECEvent2014_9_1_scaffold_368 182_001_scaffold_368
Species: Candida parapsilosis (66.67%)
3 8023 bp 40.31 152.80 52.95
NECEvent2014_9_1_scaffold_627 182_001_scaffold_627
Species: Candida orthopsilosis (66.67%)
3 2644 bp 37.10 157.03 47.66
NECEvent2014_9_1_scaffold_381 182_001_scaffold_381
Species: Candida parapsilosis (66.67%)
3 7388 bp 37.64 111.93 22.46
NECEvent2014_9_1_scaffold_383 182_001_scaffold_383
Species: Candida parapsilosis (100%)
3 7167 bp 37.34 123.98 59.98
NECEvent2014_9_1_scaffold_385 182_001_scaffold_385
Species: Candida parapsilosis (66.67%)
3 7064 bp 41.78 135.24 94.62
NECEvent2014_9_1_scaffold_393 182_001_scaffold_393 3 6701 bp 37.73 189.04 36.85
NECEvent2014_9_1_scaffold_394 182_001_scaffold_394 3 6694 bp 40.53 270.33 40.78
NECEvent2014_9_1_scaffold_650 182_001_scaffold_650
Genus: Candida (66.67%)
3 2538 bp 38.81 133.16 45.04
NECEvent2014_9_1_scaffold_403 182_001_scaffold_403
Species: Candida parapsilosis (100%)
3 6169 bp 38.97 121.16 88.99
NECEvent2014_9_1_scaffold_420 182_001_scaffold_420
Species: Candida parapsilosis (66.67%)
3 5371 bp 35.28 98.64 71.33
NECEvent2014_9_1_scaffold_423 182_001_scaffold_423
Species: Candida parapsilosis (100%)
3 5320 bp 38.80 99.53 56.05
NECEvent2014_9_1_scaffold_695 182_001_scaffold_695
Species: Candida parapsilosis (100%)
3 2342 bp 40.69 137.57 68.53
NECEvent2014_9_1_scaffold_446 182_001_scaffold_446
Genus: Candida (66.67%)
3 4743 bp 39.55 130.58 42.76
NECEvent2014_9_1_scaffold_463 182_001_scaffold_463
Species: Candida parapsilosis (66.67%)
3 4372 bp 39.84 121.35 70.54
NECEvent2014_9_1_scaffold_488 182_001_scaffold_488
Species: Candida parapsilosis (66.67%)
3 3920 bp 36.35 109.74 48.06
NECEvent2014_9_1_scaffold_492 182_001_scaffold_492
Species: Candida parapsilosis (100%)
3 3833 bp 41.46 239.66 83.82
NECEvent2014_9_1_scaffold_493 182_001_scaffold_493
Species: Candida parapsilosis (66.67%)
3 3821 bp 38.08 111.92 40.91
NECEvent2014_9_1_scaffold_507 182_001_scaffold_507
Species: Candida parapsilosis (66.67%)
3 3661 bp 35.35 121.77 40.15
NECEvent2014_9_1_scaffold_517 182_001_scaffold_517
Species: Candida parapsilosis (100%)
3 3550 bp 39.41 148.56 80.11
NECEvent2014_9_1_scaffold_545 182_001_scaffold_545
Species: Candida parapsilosis (66.67%)
3 4007 bp 38.56 122.07 57.27
NECEvent2014_9_1_scaffold_549 182_001_scaffold_549
Species: Candida parapsilosis (66.67%)
3 3201 bp 39.14 115.46 75.54
NECEvent2014_9_1_scaffold_1072 182_001_scaffold_1072
Species: Candida parapsilosis (50%)
2 2115 bp 39.10 88.30 43.83
NECEvent2014_9_1_scaffold_830 182_001_scaffold_830
Species: Candida parapsilosis (50%)
2 1949 bp 38.38 133.15 66.50
NECEvent2014_9_1_scaffold_1086 182_001_scaffold_1086
Species: Candida parapsilosis (50%)
2 1482 bp 36.84 111.23 32.19
NECEvent2014_9_1_scaffold_578 182_001_scaffold_578
Species: Candida parapsilosis (100%)
2 2974 bp 40.85 316.75 84.03
NECEvent2014_9_1_scaffold_1656 182_001_scaffold_1656
Species: Candida parapsilosis (50%)
2 1444 bp 38.02 129.33 76.04
NECEvent2014_9_1_scaffold_2406 182_001_scaffold_2406
Species: Candida parapsilosis (100%)
2 1092 bp 40.75 207.01 100.28
NECEvent2014_9_1_scaffold_2408 182_001_scaffold_2408
Species: Candida parapsilosis (100%)
2 1115 bp 40.54 179.87 92.29
NECEvent2014_9_1_scaffold_620 182_001_scaffold_620
Species: Candida parapsilosis (100%)
2 2677 bp 37.09 100.97 21.40
NECEvent2014_9_1_scaffold_882 182_001_scaffold_882
Species: Candida parapsilosis (100%)
2 1853 bp 38.10 143.28 27.68
NECEvent2014_9_1_scaffold_631 182_001_scaffold_631
Species: Candida parapsilosis (100%)
2 4312 bp 39.15 129.37 54.48
NECEvent2014_9_1_scaffold_888 182_001_scaffold_888
Species: Candida parapsilosis (50%)
2 1845 bp 39.13 153.66 60.81
NECEvent2014_9_1_scaffold_1165 182_001_scaffold_1165
Species: Candida parapsilosis (50%)
2 1397 bp 36.36 88.69 32.86
NECEvent2014_9_1_scaffold_406 182_001_scaffold_406
Species: Candida parapsilosis (50%)
2 6029 bp 38.66 142.14 29.31
NECEvent2014_9_1_scaffold_928 182_001_scaffold_928
Species: Candida parapsilosis (50%)
2 1734 bp 39.27 142.39 25.26
NECEvent2014_9_1_scaffold_421 182_001_scaffold_421
Species: Candida orthopsilosis (50%)
2 5362 bp 37.04 136.74 29.82
NECEvent2014_9_1_scaffold_424 182_001_scaffold_424
Species: Candida parapsilosis (100%)
2 5313 bp 38.47 126.28 82.67
NECEvent2014_9_1_scaffold_431 182_001_scaffold_431
Species: Candida parapsilosis (100%)
2 5079 bp 39.10 188.16 41.76
NECEvent2014_9_1_scaffold_693 182_001_scaffold_693
Species: Candida parapsilosis (100%)
2 2354 bp 39.21 72.90 61.94
Displaying items 301-350 of 405 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.