Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
RpoD subfamily RNA polymerase sigma-70 subunit | rbh |
KEGG
DB: KEGG |
62.8 | 293.0 | 342 | 1.10e-91 | fte:Fluta_3405 |
RpoD subfamily RNA polymerase sigma-70 subunit | similarity |
KEGG
DB: KEGG |
62.8 | 293.0 | 342 | 1.10e-91 | fte:Fluta_3405 |
RNA polymerase sigma-70 factor n=2 Tax=Flavobacteriaceae RepID=D5BH99_ZUNPS (db=UNIREF evalue=2.0e-90 bit_score=335.0 identity=60.54 coverage=95.6521739130435) | similarity |
UNIREF
DB: UNIREF |
60.54 | 95.65 | 335 | 2.00e-90 | fte:Fluta_3405 |
coiled-coil (db=Coil db_id=coil from=259 to=280 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | fte:Fluta_3405 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=22 to=131 evalue=5.5e-39 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 5.50e-39 | fte:Fluta_3405 |
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=27 to=130 evalue=3.6e-34) | iprscan |
interpro
DB: Gene3D |
null | null | null | 3.60e-34 | fte:Fluta_3405 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=237 to=249 evalue=3.4e-22 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 3.40e-22 | fte:Fluta_3405 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=258 to=273 evalue=3.4e-22 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 3.40e-22 | fte:Fluta_3405 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=273 to=284 evalue=3.4e-22 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 3.40e-22 | fte:Fluta_3405 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=85 to=98 evalue=3.4e-22 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 3.40e-22 | fte:Fluta_3405 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=109 to=117 evalue=3.4e-22 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 3.40e-22 | fte:Fluta_3405 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=56 to=288 evalue=1.2e-21 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 1.20e-21 | fte:Fluta_3405 |
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=63 to=130 evalue=1.4e-17 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.40e-17 | fte:Fluta_3405 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=195 to=297 evalue=4.0e-17 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 4.00e-17 | fte:Fluta_3405 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=219 to=297 evalue=4.7e-17 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 4.70e-17 | fte:Fluta_3405 |
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=233 to=286 evalue=4.4e-15 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 4.40e-15 | fte:Fluta_3405 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=132 to=190 evalue=8.7e-12 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 8.70e-12 | fte:Fluta_3405 |
Sigma70_r3 (db=HMMPfam db_id=PF04539 from=141 to=200 evalue=3.5e-08 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 3.50e-08 | fte:Fluta_3405 |
Sigma70_r1_2 (db=HMMPfam db_id=PF00140 from=23 to=56 evalue=1.5e-07 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.50e-07 | fte:Fluta_3405 |
zpr:ZPR_0926 RNA polymerase sigma-70 factor; K03086 RNA polymerase primary sigma factor alias=ACD80_10181.17780.22G0004,ACD80_10181.17780.22_4,ACD80_C00053G00004 id=132687 tax=ACD80 species=unknown genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes organism_group=SR1 | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 587 | 2.30e-165 | fte:Fluta_3405 |
zpr:ZPR_0926 RNA polymerase sigma-70 factor; K03086 RNA polymerase primary sigma factor Tax=ACD80 |
UNIPROT
DB: UniProtKB |
99.0 | 298.0 | 555 | 5.50e-155 | ggdbv1_132687 |