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NECEvent2014_4_4_scaffold_3241_2

Organism: NECEvent2014_4_4_Propionibacterium_avidum_HGH0353-rel_64_5_partial

partial RP 32 / 55 MC: 4 BSCG 24 / 51 ASCG 5 / 38
Location: comp(795..1304)

Top 3 Functional Annotations

Value Algorithm Source
Sigma subunit n=1 Tax=Propionibacterium avidum 44067 RepID=M9VEX4_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 98.8
  • Coverage: 169.0
  • Bit_score: 331
  • Evalue 5.30e-88
  • rbh
sigma subunit similarity KEGG
DB: KEGG
  • Identity: 98.8
  • Coverage: 169.0
  • Bit_score: 331
  • Evalue 1.50e-88
Sigma factor {ECO:0000313|EMBL:EGY77842.1}; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium avidum ATCC 25577. similarity UNIPROT
DB: UniProtKB
  • Identity: 98.8
  • Coverage: 169.0
  • Bit_score: 331
  • Evalue 7.50e-88

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Taxonomy

Propionibacterium avidum → Propionibacterium → Propionibacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 510
GTCAAAGGAAAACGCATCACCATCGACCTGTCGGCATCCGCCTTCAGCCAGTTCAAGAATGGCGAACAGGTGCAAAGGGCCATCCAGCAGCTCGTCGTGACCGCCACGGCGGCCGTCGGTGACCGCACCGGTGACAAATCGGTGCGAATCCTCGTTGATGGTTCGCCGAACCTACCGATCATTGGCAAGCCCGCCACGGATTTCGTCGACGAAGGTCTTGCTCAGTGCGCCCGGGTGTGGGTTGACACGCCACAGGCCGGTGCTGATGTGCCGTCCGGCAAGATCACCATCAGCGGTCTCGCCCAGCCGACGGTTTCCGTCATGACGTACGAAGTGAGGTCCCCCCAGGGCAATCAGATGGTCACCAGCGGGCAGATCAACATCTCGGCCACTGACGGCGACAGGTGGCGCCCGTGGAGCGCCACCGTAACCATGCCCAAGGGGGAGTATGACGTGGTGATCCGGGAAGGAAACCGCATCGCTGGCGAGAAGGTTGTGACGGCGAAGTAG
PROTEIN sequence
Length: 170
VKGKRITIDLSASAFSQFKNGEQVQRAIQQLVVTATAAVGDRTGDKSVRILVDGSPNLPIIGKPATDFVDEGLAQCARVWVDTPQAGADVPSGKITISGLAQPTVSVMTYEVRSPQGNQMVTSGQINISATDGDRWRPWSATVTMPKGEYDVVIREGNRIAGEKVVTAK*