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NECEvent2014_4_5_scaffold_235_15

Organism: NECEvent2014_4_5_Clostridium_7_2_43FAA-rel_28_9

near complete RP 50 / 55 MC: 5 BSCG 50 / 51 MC: 3 ASCG 16 / 38 MC: 2
Location: comp(11636..12583)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 98.7
  • Coverage: 315.0
  • Bit_score: 608
  • Evalue 4.50e-171
rpoA; DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 92.7
  • Coverage: 315.0
  • Bit_score: 575
  • Evalue 1.10e-161
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H1N6_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 98.7
  • Coverage: 315.0
  • Bit_score: 608
  • Evalue 3.20e-171
  • rbh

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Taxonomy

Clostridium sp. 7_2_43FAA → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 948
ATGTTAGAAATAGAAAAGCCAATAATTGAATGTATAGAAGCAAATGAAAATGGTACTTATGGTAAATATGTAGTTGAACCATTAGAAAGAGGATATGGTATTACACTTGGAAATGCTCTAAGAAGAATACTTTTATCATCACTTCCTGGTGCAGCTCCAACATCAGTAAAAATTGATGGAGTACTACACGAATTTTCTACTGTACAAGGTGTTAAAGAAGATGTTACAGAAATAATCTTAAACATAAAAGCTTTAGCATTAATAATGAATGGTGAAGGTCCAAAGACAATATATATAGATGCTCAAGGACCAGGAGTAGTTACAGGTGCAGATATTAAAACTGACGGAGACGTTGAAGTTGTAAGTAAAGATCTTCATATAGCTACATTAGATGATAATGGTAAGTTATACATGGAGATAACAGTTAATAGAGGAAGAGGATATGTTACTCAAAATAAAAATAAGAGTGAAGATCTTCCATTATCAGCTATTGCTGTAGACTCAATATATACTCCTGTTAAGAGAGTTAACTTTACTGTTGAAAATACAAGAGTTGGTCAAATTACTGACTACGATAAGTTAACATTAGAAATCTGGACTAATGGAACTATTAAAATTGATGAAGCTATTAGCTTATCATCAAAAATACTTATAGAACACTTTAAGTTATTTATGTCATTAGGTGATAGTACTAATGATGTAGAAATTATGATAGAAAAAGAAGAAGATAAGAAAGAAAAAGTACTAGAGATGACTGTAGAAGAGCTAGATTTATCAGTTAGATCATATAACTGTTTAAAGAGAGCTGGAATCAATACAGTTCAAGAACTTGCTGGAAAGTCTATGGATGACATGATGAAGGTAAGAAATCTAGGAAAGAAATCTTTAGAGGAAGTCGAAAGAAAGCTTAAGGAATTAGGCTTAGGATTAAGACTAAACGATGAGTAA
PROTEIN sequence
Length: 316
MLEIEKPIIECIEANENGTYGKYVVEPLERGYGITLGNALRRILLSSLPGAAPTSVKIDGVLHEFSTVQGVKEDVTEIILNIKALALIMNGEGPKTIYIDAQGPGVVTGADIKTDGDVEVVSKDLHIATLDDNGKLYMEITVNRGRGYVTQNKNKSEDLPLSAIAVDSIYTPVKRVNFTVENTRVGQITDYDKLTLEIWTNGTIKIDEAISLSSKILIEHFKLFMSLGDSTNDVEIMIEKEEDKKEKVLEMTVEELDLSVRSYNCLKRAGINTVQELAGKSMDDMMKVRNLGKKSLEEVERKLKELGLGLRLNDE*