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NECEvent2014_4_5_scaffold_449_12

Organism: NECEvent2014_4_5_Clostridium_7_2_43FAA-rel_28_9

near complete RP 50 / 55 MC: 5 BSCG 50 / 51 MC: 3 ASCG 16 / 38 MC: 2
Location: 12227..15736

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=457396 species="Bacteria; Fi similarity UNIPROT
DB: UniProtKB
  • Identity: 87.3
  • Coverage: 999.99
  • Bit_score: 2057
  • Evalue 0.0
mfd; transcription-repair coupling factor (EC:3.6.1.-) similarity KEGG
DB: KEGG
  • Identity: 71.3
  • Coverage: 999.99
  • Bit_score: 1722
  • Evalue 0.0
Transcription-repair coupling factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HH01_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 87.3
  • Coverage: 999.99
  • Bit_score: 2057
  • Evalue 0.0
  • rbh

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Taxonomy

Clostridium sp. 7_2_43FAA → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3510
ATGAGATTAAAGGGAGTATTGCAGCCCTTAAGTGAAAACTCTACTTTTAATGAAATAATATCTAGCATTAAAAATAAAAAGTATCCAATTAGTATAAATGGATTATCTGATTCGGGTAAAAGTTATGAAATATATGGTATTTTTGAAAAAATAGATTCCTCCATGGTGATATTAACTCACAGTGACATGGAGGCTAAAAACATATATGAGGACCTAAGTTTTTATACAAATGATATATATTATTTTCCTGCAAAGGAAGTGGTTTTTTACAATATAGATGCTATTTCAGGTGATTTAAGATGGGCTAGGTTAAAAGTGATAAAAGAGATGATGAAGGATTCTAAGAAGATAATAGTAACTTCGATAGATTCTCTTACTTCAGTTTATACACCTAGAGCATTATTTGAAGAATATAATTTTGAATTAAAGGTTGATGATGAAGTTGATTTTAAAGCTTTAAGTCAAAAATTATTAGAATGTGGATATGAAAGAGTGGAAGCCGTTGAAGGTAAGGGAGAATTCTCCTTAAGAGGGGGAATATTAGATGTCTTCCCGCCAACGACTACTTATCCATATAGGATAGAGCTTTTTGGTGATACTATAGATTCTATAAGAACTTTTAATACTGAATCACAGAGAAGTATTGAAAAGGTTGACATGATGGAAGTGTTTCCTGCTAAAGAAATTATATTAAATGAAGAAGCCTTAAATAGAGGAAAAGAAAGCATTTTAAAGGAATTTGAAGAAATTAAGGGTAAGGGAAGTTCTGATAAGGAGAGAATAGAGAAGCTTGAAAAAATAGTAAAAGCTAATATAGAAGCCTTAACTGAATTACTTACTTTTGAAACTGTAGATAGTTATTTGCCATACTTTTATGAAAAGCCAAATAGCTTTTTTGACTATGTAGAAAATTATACATATGTTGTAGATGATATTAAAAAATGTGAAGGTAAACTAGAGAGTTGTTACTTTGAGTTTATTGAGAACTATGAAGCTTTCCTACAAAGGGGAGGTATATTGCCGTCTCAAAATAGACTCTTAATAGATAAGAATGATTTATTAGAAAGATTAGATAATCAAAAAGTTATAACTTTAGATGTTTTTGAAGCTAACAGCAATTTCTTAACACCTATTTCAAAATATAATGTTAATGCATTAACATTAAATAGTTATCAAGGTCAATTAGATTTATTAATTGAAGATATTAAGGAAAAGAAGGAAAAGGGATTCAAAACTATTATCTTATCTGGTACAAGAACAAGAGGAGAAAGACTTGTAAATACATTAAGAGATAGAGAAATAGAAAGTTCTTACAGAGAAGATATACAATCTATAGAGTTTGGAGAAGTAGTTATTACATTTGGTAATCTTTTAAAAGGTTTTGAGTATCCAGATTTAAAAATATGTATTATATCAGATAAAGACGTATTTGGAGAAGCTAAAAGAAAAATTTCCAACAGAAAGAGTCAGAAAAAAGGCGTAGGAAAAATAAAGAGCTTTGCAGAATTAAAACTTGGTGATTATGTAGTACATGCAAATCACGGAGTTGGCGTGTATAAGGGGATTAAACAAATAGAAGTAGGGGGACATAAGAGAGATTACTTAGATATAGTTTATGATAAAGGTGACAAGCTATATGTTCCTGTAGATCAATTAGATTTAGTTCAAAAATATATAGGTAGTGAGGGGAAAACTCCTAAGGTAAATAAATTAGGAAGTAACGAGTGGACTAAAGCTAAGGCGAAGGTTAAGAAATCAATAAATGAAATAGCTGAAGATTTAGTTAAGTTATATGCTACAAGGGCTACTCTTAAAGGATATAAATTTAGTAAAGATACAGAATGGCAAAGACAATTTGAAGATGAGTTTCCATTTGAAGAGACTCCAGATCAATTAACATCATTAGAAGAAATTAAGGCAAACATGGAATCAGATAAGCCTATGGATAGACTTTTATGTGGTGATGTTGGATATGGAAAAACTGAAGTTGCAGTAAGAGCAGCATTTAAAGCAGTAATGGATGGAAAGCAGGTAGCTTTCTTAGTTCCAACTACTATTTTAGCAGAGCAACATTATAAAAATATGCTTAAAAGATTCTCAGACTTCCCAGTTAAGATTGATATGATTAGTAGGTTTAGAAGTGCTAAAGAACAAAAACTTACATTGCAGGCAGCTAAGGAAGGGAATGTTGATATAGTTATTGGAACCCATAGATTAGTTTCTAAGGATATAGTATTTAAGGATTTAGGTCTATTAATAATAGATGAGGAACAAAGATTTGGAGTTGCTCAAAAAGAAAAAATTAAGAGTCTAAAGAAAAATGTAGATGTATTGACTTTGAGTGCGACACCTATTCCAAGAACTCTTCATATGTCTTTAACTGGAGCTAGGGATATTTCTGTTATAGAAACTCCACCAGAAGAAAGATATCCGATACAAACTTACGTAGTTGAGCAAAATGATCAGCTTGTTAGAGATGCTATATTAAGGGAAGTAAATAGAGAAGGCCAAGTTTACTATGTTTATAATAGAGTTGATAGCATAGATGCTATGGCTAAGTATATTAGTGAACTAGTACCTGAGTGTAAAGTTGGAATAATTCACGGACAGATGACTGAAAGACAGTTAGAAAAAGAAATGATTAGTTTTATGAATAGAGAGTATGACATTCTAGTATGTACAACTATTATAGAAACTGGAATAGATATACCTAATGTTAATACTATGATAATTCACGACTCTGATAAAATGGGATTATCTCAGCTATACCAATTAAGAGGTAGAGTAGGAAGATCAAATAGAATAGCCTATGCATACTTTATGTACACTAAAGATAAGGTTCTAACAGAAGTAGCTGAGAAGAGGCTTAAGGCACTTAAGGACTTTACGGAACTTGGATCAGGATTCAAAATAGCCATGAGAGACTTAGAAATAAGGGGAGCAGGAAATATGATGGGTTCAGCTCAACATGGACATATGGCTGCTATAGGGTATGATTTATACTGTAGGATGTTAGAAGATACTATTAAGATAGTTAAAGGTGAAATTGAGAAGGAACCGATTGAAACAACAGTAGATATTAAGGTTGATGCATATATACCTGGAACGTATATTGAAGATGAAATTCAAAAAATTGAGGTTTATAAAAAGATTGCTGCAATAGATGGACTAGATGACTATATGGATATTAAATCAGAGCTTGAGGATAGATATTCAGAGATTCCAGAACCAGTATATAACTTAATGGATATAGCTTATATAAAGGGTAGGGCAAAGCAACTTTCTATAGAAGAAGTTAAAGAAATGCCAAAGGAAATTAGATTTATTTTTGCTGATGGAGCAGGTAATATAAATAATGTATATAAGAATTTATTAGAAAACCATAAGGATAAGGTATTCTTAATGTTTGGAGAAAAGCCATACTTTGCAGTAAGACTATCAGAAATTAAAAAAGAAGGCATGCTAGGACTATTTAAAGAGATGCTAGATAACTTAATTAAAAATATTTAA
PROTEIN sequence
Length: 1170
MRLKGVLQPLSENSTFNEIISSIKNKKYPISINGLSDSGKSYEIYGIFEKIDSSMVILTHSDMEAKNIYEDLSFYTNDIYYFPAKEVVFYNIDAISGDLRWARLKVIKEMMKDSKKIIVTSIDSLTSVYTPRALFEEYNFELKVDDEVDFKALSQKLLECGYERVEAVEGKGEFSLRGGILDVFPPTTTYPYRIELFGDTIDSIRTFNTESQRSIEKVDMMEVFPAKEIILNEEALNRGKESILKEFEEIKGKGSSDKERIEKLEKIVKANIEALTELLTFETVDSYLPYFYEKPNSFFDYVENYTYVVDDIKKCEGKLESCYFEFIENYEAFLQRGGILPSQNRLLIDKNDLLERLDNQKVITLDVFEANSNFLTPISKYNVNALTLNSYQGQLDLLIEDIKEKKEKGFKTIILSGTRTRGERLVNTLRDREIESSYREDIQSIEFGEVVITFGNLLKGFEYPDLKICIISDKDVFGEAKRKISNRKSQKKGVGKIKSFAELKLGDYVVHANHGVGVYKGIKQIEVGGHKRDYLDIVYDKGDKLYVPVDQLDLVQKYIGSEGKTPKVNKLGSNEWTKAKAKVKKSINEIAEDLVKLYATRATLKGYKFSKDTEWQRQFEDEFPFEETPDQLTSLEEIKANMESDKPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAEQHYKNMLKRFSDFPVKIDMISRFRSAKEQKLTLQAAKEGNVDIVIGTHRLVSKDIVFKDLGLLIIDEEQRFGVAQKEKIKSLKKNVDVLTLSATPIPRTLHMSLTGARDISVIETPPEERYPIQTYVVEQNDQLVRDAILREVNREGQVYYVYNRVDSIDAMAKYISELVPECKVGIIHGQMTERQLEKEMISFMNREYDILVCTTIIETGIDIPNVNTMIIHDSDKMGLSQLYQLRGRVGRSNRIAYAYFMYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTIKIVKGEIEKEPIETTVDIKVDAYIPGTYIEDEIQKIEVYKKIAAIDGLDDYMDIKSELEDRYSEIPEPVYNLMDIAYIKGRAKQLSIEEVKEMPKEIRFIFADGAGNINNVYKNLLENHKDKVFLMFGEKPYFAVRLSEIKKEGMLGLFKEMLDNLIKNI*