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NECEvent2014_5_2_scaffold_1276_3

Organism: NECEvent2014_5_2_Pseudomonas_aeruginosa-rel_66_6_partial

partial RP 39 / 55 MC: 1 BSCG 35 / 51 ASCG 9 / 38 MC: 1
Location: 1754..2002

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=133 Tax=Pseudomonas RepID=HFQ_PSEA7 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 82.0
  • Bit_score: 165
  • Evalue 1.90e-38
RNA chaperone Hfq similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 82.0
  • Bit_score: 165
  • Evalue 5.30e-39
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1306165 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseud similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 82.0
  • Bit_score: 165
  • Evalue 2.60e-38

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 249
ATGTCAAAAGGGCATTCGCTACAAGACCCTTACCTCAATACCCTGCGGAAAGAACGCGTCCCGGTTTCCATCTATCTGGTCAACGGCATCAAGCTGCAAGGCCAGATCGAGTCCTTCGACCAGTTTGTCATCCTGCTGAAGAACACCGTCAGCCAGATGGTTTACAAGCACGCGATCTCCACCGTGGTACCGAGCCGTCCGGTGCGTCTGCCGAGCGGTGACCAGCCGGCCGAGCCGGGCAACGCTTGA
PROTEIN sequence
Length: 83
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLPSGDQPAEPGNA*