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NECEvent2014_5_2_scaffold_5200_2

Organism: NECEvent2014_5_2_Pseudomonas_aeruginosa-rel_66_6_partial

partial RP 39 / 55 MC: 1 BSCG 35 / 51 ASCG 9 / 38 MC: 1
Location: 820..1293

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor rpoS n=1 Tax=Pseudomonas aeruginosa BWHPSA026 RepID=U8PFJ4_PSEAI similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 158.0
  • Bit_score: 319
  • Evalue 2.50e-84
  • rbh
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 158.0
  • Bit_score: 319
  • Evalue 7.20e-85
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=1415629 species="Bacteria; Proteobacter similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 158.0
  • Bit_score: 319
  • Evalue 3.60e-84

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 474
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGAGTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACATCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAGGAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGTGGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCCGCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACC
PROTEIN sequence
Length: 158
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEEEVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT