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NECEvent2014_5_3_scaffold_3157_2

Organism: NECEvent2014_5_3_Pseudomonas_aeruginosa_rel_66_7

near complete RP 49 / 55 MC: 3 BSCG 43 / 51 ASCG 13 / 38 MC: 2
Location: 236..715

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=66 Tax=Pseudomonas RepID=M9RZJ8_PSEAI similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 159.0
  • Bit_score: 316
  • Evalue 2.20e-83
  • rbh
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 99.4
  • Coverage: 159.0
  • Bit_score: 314
  • Evalue 1.40e-83
ECF subfamily sigma factor {ECO:0000313|EMBL:BAR67805.1}; RNA polymerase sigma factor {ECO:0000313|EMBL:AKE69749.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; similarity UNIPROT
DB: UniProtKB
  • Identity: 99.4
  • Coverage: 159.0
  • Bit_score: 314
  • Evalue 6.80e-83

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 480
TTGGAAAACCATTATCGGGAGCTGCTGCGATTCCTCAGTGCCAGGCTCGGGGATCGACACGCAGCGGCGGATGTCGCCCACGACGCGTATTTGCGCGTTCTGGAGCGCTCCAGTCAAGCGCAGATCGAGCATCCGAAGGCTTTTCTGTACCGGACGGCGCTCAACCTGGCGGTGGACGAGCACCGTCGCAGCCGGGTGCGCCGGGCGGAACCCCTGGAGGTCCTGGACGACGAGGAGGGCCTGGCCAGTCCCTCGCCGCAGACGGTGGTCGACCAGGGGCAGCGCCTGGACAACCTGCAGCGCGCGCTGGCCGAGTTGCCGGCCATCTGCCGCAGTTCCTTCCTGTTGCGCAAGCTGGACGGCCTGTCCCATTCGCAGATCGCCGAACATCTCAATATTTCCCGCAGCCTGGTGGAAAAGCACATCGTCAACGCGATGAAGCACTGTCGGGTGCGCATGCGCGAATGGGAAGCCGACTGA
PROTEIN sequence
Length: 160
LENHYRELLRFLSARLGDRHAAADVAHDAYLRVLERSSQAQIEHPKAFLYRTALNLAVDEHRRSRVRRAEPLEVLDDEEGLASPSPQTVVDQGQRLDNLQRALAELPAICRSSFLLRKLDGLSHSQIAEHLNISRSLVEKHIVNAMKHCRVRMREWEAD*