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NECEvent2014_5_3_scaffold_4194_1

Organism: NECEvent2014_5_3_Pseudomonas_aeruginosa_rel_66_7

near complete RP 49 / 55 MC: 3 BSCG 43 / 51 ASCG 13 / 38 MC: 2
Location: 3..1397

Top 3 Functional Annotations

Value Algorithm Source
Type III secretory apparatus protein PcrD n=2 Tax=Pseudomonas aeruginosa RepID=M9S358_PSEAI similarity UNIREF
DB: UNIREF100
  • Identity: 99.8
  • Coverage: 465.0
  • Bit_score: 892
  • Evalue 1.60e-256
  • rbh
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 465.0
  • Bit_score: 893
  • Evalue 2.10e-257
Low calcium response locus protein D {ECO:0000313|EMBL:CEI19685.1}; Type III secretion inner membrane channel protein PcrD {ECO:0000313|EMBL:BAR68537.1}; Type III secretory apparatus protein {ECO:0000 similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 465.0
  • Bit_score: 893
  • Evalue 1.00e-256

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1395
GTGAGCACCACGCGGATGATCCTGCTGCAGGCCGACGCGGGGCAGATCGTCAACACCTTCGGCAGCTTCGTGGTCGGCGGCAACCTGGTGGTGGGCATCATCATCTTCCTGATCATCACCATCGTGCAGTTCCTGGTGATCACCAAGGGTGCCGAGCGGGTCGCCGAGGTCAGCGCGCGCTTTTCCCTGGATGCCATGCCAGGCAAGCAGATGAGCATCGACGGCGACATGCGTGCCGGCGTGATCGATGTCAACGAGGCGCGGGCGCGGCGCGCGGTGATCGAAAAGGAAAGCCAGATGTTCGGCTCCATGGACGGCGCGATGAAGTTCGTCAAGGGCGACGCCATCGCCGGGCTGATCATTATCGTCGTCAACATCCTCGGCGGCATCGCCATCGGCGTCACGCAGAAGGGCCTGAGCACCGCCGACGCGCTGCAACTGTACGCGGTGCTGACCGTCGGCGATGGCATGGTCTCGCAGGTGCCGGCGTTGCTGATCGCCATCACCGCCGGGATCATCGTCACCCGGGTGTCTTCCGACGAATCGGCGGACCTCGGCAGCGACATCGGCGAACAGGTGGTGGCGCAGCCCAAGGCGCTGCTGATCGGCGGCCTGTTGCTGGTGCTGTTCGGCCTGATTCCCGGTTTCCCGACCCTGACCTTCCTGGCTCTCGCGCTGCTGGTCGGCGGCGGCGGCTATTTCATGCTCTGGCGCCAGCGGGCCCAGGCCAGCGCCGGTTCCCGCGACCTGCCGGCGCTGCTCGCGCAGGGCGCCGGAGCACCATCGGCCAAGGCGCGTGGCAAGGCTGGCGGCGGCAAGCCGAAGGCCGGGCGTCTCGCCGAGCAGGAAGAATTCGCCCTCACCGTGCCGTTGCTGATCGACGTCGATGCCAGCCTCCAGGAACGTCTCGAGGCGATGTCGCTGAACGAGGAGCTGGTGCGGGTACGACGCGCGCTGTACCTGGATTTCGGCGTGCCGTTCCCGGGTATCCACTTGCGCTTCAATGAAGCGATGGGCGATGGCGAATACCTGGTGCAGCTACAGGAGGTCCCGGTCGCGCGCGGATGCCTGCGGCCGGGCTGGTTGCTGGTGCGCGAACGCGCCGCGCAGCTGGAACTGCTCGCGGTCCCCCACGAGCCGGCAGAGCTGCAGGTGCCGGGAGAAGAGGCGAGCTGGGTGGAGCAGGCGCATCAGGATCGCCTGGAGCGTTCCGGCTGTGCCTGCCTGGGCCTGGAGCAGGTGCTCACCTGGCACCTGTCCCATGTGCTGCGGGAGTACGCCGAGGATTTCATCGGCATCCAGGAGACGCGCTACCTGCTGGAGCAGATGGAGCAGGGTTACGGCGAGCTGGTGAAGGAGGCGCAGCGGATCGTTCCCCTGCAGCGGATGACCGAG
PROTEIN sequence
Length: 465
VSTTRMILLQADAGQIVNTFGSFVVGGNLVVGIIIFLIITIVQFLVITKGAERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVNEARARRAVIEKESQMFGSMDGAMKFVKGDAIAGLIIIVVNILGGIAIGVTQKGLSTADALQLYAVLTVGDGMVSQVPALLIAITAGIIVTRVSSDESADLGSDIGEQVVAQPKALLIGGLLLVLFGLIPGFPTLTFLALALLVGGGGYFMLWRQRAQASAGSRDLPALLAQGAGAPSAKARGKAGGGKPKAGRLAEQEEFALTVPLLIDVDASLQERLEAMSLNEELVRVRRALYLDFGVPFPGIHLRFNEAMGDGEYLVQLQEVPVARGCLRPGWLLVRERAAQLELLAVPHEPAELQVPGEEASWVEQAHQDRLERSGCACLGLEQVLTWHLSHVLREYAEDFIGIQETRYLLEQMEQGYGELVKEAQRIVPLQRMTE