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NECEvent2014_5_3_scaffold_4750_2

Organism: NECEvent2014_5_3_Pseudomonas_aeruginosa_rel_66_7

near complete RP 49 / 55 MC: 3 BSCG 43 / 51 ASCG 13 / 38 MC: 2
Location: comp(230..739)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=125 Tax=Pseudomonas RepID=G2L4X0_PSEAI similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 169.0
  • Bit_score: 342
  • Evalue 1.80e-91
  • rbh
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 169.0
  • Bit_score: 342
  • Evalue 5.00e-92
DNA-directed RNA polymerase specialized sigma subunit {ECO:0000313|EMBL:BAR68123.1}; Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI76080.1}; RNA polymerase sigma factor {ECO:00003 similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 169.0
  • Bit_score: 342
  • Evalue 2.50e-91

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 510
ATGGATAGCCAAGGCTCCATCAAGAACACCCTGATCGCCCAGTTGTTCCAGCAGAACTACGACTGGCTGTGCAAGAAGCTGTCCTACCAGACCGGCTGTAGCCACAGCGCCGAAGACCTCGCCGCCGAGGCCTTCCTGCAGGTCTGGATGCTCCCCGACCCGGCGTCGATCCGCTCGCCGCGGGCGTTCCTCGCGACCATCGCGCAACGCCTGATGTACGAGAGCTGGCGGCGCAAGGACCTGGAGCGCGCCTACCTGCAGATCCTCGCCGAGGCGCCGGAGGCGGTGCAGCCGTCGCCCCACGAACAGTGGATGCTGATCGAGAGCCTGCAAGCCATCGACCGCCTGCTCGACGGCCTGTCCGGGCAGGCCAGGGCAGTGTTCCTGATGAGCCAGCTGGAAGGCCTGACCTACGTGCAGATCGGCGAACGCCTCGGATTGTCCCTGGGGCGCATCCACCAGTTGATGAAGGATGCCTTGCACTGCTGCTACCGGGGATTCCAGGAATGA
PROTEIN sequence
Length: 170
MDSQGSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESWRRKDLERAYLQILAEAPEAVQPSPHEQWMLIESLQAIDRLLDGLSGQARAVFLMSQLEGLTYVQIGERLGLSLGRIHQLMKDALHCCYRGFQE*