ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.92 Longest contig: 118.83 Kbp Bin length: 627.21 Mbp GC content: 62.89 %

Contigs count: 305424 Features count: 841509 rRNAs count: 69 tRNAs count: 5835

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 101-150 of 305424 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_20cm_3_scaffold_124759 Species: Mycobacterium smegmatis (50%)	2	1581 bp	71.85	4.60	111.77
13_1_20cm_3_scaffold_489297	4	1114 bp	75.04	11.27	111.76
13_1_20cm_3_scaffold_273254 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)	2	1074 bp	65.46	3.04	111.73
13_1_20cm_3_scaffold_211653 Species: Conexibacter woesei (50%)	2	1246 bp	71.51	5.84	111.72
13_1_20cm_3_scaffold_441371 Species: GWF2_Verrucomicrobia_62_7_curated (50%)	2	1346 bp	63.00	8.02	111.66
13_1_20cm_3_scaffold_230623 Species: Conexibacter woesei (50%)	2	1193 bp	72.51	3.79	111.65
13_1_20cm_3_scaffold_273060 Species: Paenibacillus sp. D9 (50%)	2	1075 bp	55.72	4.20	111.63
13_1_20cm_3_scaffold_269513 Class: Deltaproteobacteria (66.67%)	3	1084 bp	66.79	3.94	111.62
13_1_20cm_3_scaffold_224016 Species: Conexibacter woesei (100%)	2	1567 bp	73.13	5.93	111.62
13_1_20cm_3_scaffold_291472 Species: RIFOXYB12_FULL_Lentisphaerae_65_16_curated (50%)	2	1027 bp	59.49	4.89	111.59
13_1_20cm_3_scaffold_183362 Species: R_Rokubacteria_68_19 (50%)	2	1331 bp	56.50	5.09	111.57
13_1_20cm_3_scaffold_239022 Species: Anaeromyxobacter sp. K (50%)	2	1170 bp	61.97	9.01	111.54
13_1_20cm_3_scaffold_148311 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1466 bp	60.91	4.45	111.53
13_1_20cm_3_scaffold_217333 Genus: Bradyrhizobium (66.67%)	3	1230 bp	60.81	3.27	111.46
13_1_20cm_3_scaffold_438463	3	1300 bp	72.69	7.34	111.46
13_1_20cm_3_scaffold_333431 Phylum: Proteobacteria (66.67%)	3	1556 bp	72.56	3.06	111.44
13_1_20cm_3_scaffold_173008 Species: Anaeromyxobacter sp. Fw109-5 (50%)	2	1368 bp	66.30	11.74	111.40
13_1_20cm_3_scaffold_209393 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1253 bp	60.26	3.81	111.33
13_1_20cm_3_scaffold_189987 Species: RLO_RIF_CHLX_71_12 (50%)	2	1310 bp	66.03	5.56	111.30
13_1_20cm_3_scaffold_291386 Species: RBG_16_Chloroflexi_57_9_curated (50%)	2	1027 bp	69.72	7.33	111.30
13_1_20cm_3_scaffold_151375 Species: Candidatus Microthrix parvicella (50%)	2	1453 bp	75.91	9.16	111.29
13_1_20cm_3_scaffold_301507 Species: RLO_Betaproteobacteria_68_19 (100%)	2	1003 bp	68.59	6.26	111.27
13_1_20cm_3_scaffold_226079 Species: Stigmatella aurantiaca (50%)	2	1206 bp	73.05	9.16	111.19
13_1_20cm_3_scaffold_403633	3	1287 bp	71.25	7.22	111.19
13_1_20cm_3_scaffold_158107 Species: RLO_RIF_CHLX_71_12 (66.67%)	3	1425 bp	65.40	7.75	111.16
13_1_20cm_3_scaffold_218825	3	1226 bp	57.83	3.69	111.09
13_1_20cm_3_scaffold_406576 Species: RLO_RIF_CHLX_71_12 (75%)	4	1615 bp	70.34	6.06	111.08
13_1_20cm_3_scaffold_265884	3	1094 bp	62.80	4.59	111.06
13_1_20cm_3_scaffold_380375 Species: R_Nitrospirae_62_14 (50%)	2	1521 bp	68.11	3.80	111.04
13_1_20cm_3_scaffold_95325 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (66.67%)	3	1775 bp	67.77	3.25	111.04
13_1_20cm_3_scaffold_265504	2	1095 bp	72.33	7.11	110.96
13_1_20cm_3_scaffold_182767	2	1333 bp	62.72	2.82	110.95
13_1_20cm_3_scaffold_288933 Species: GWF2_Elusimicrobia_62_30_curated (50%)	2	1033 bp	60.21	2.92	110.94
13_1_20cm_3_scaffold_334121 Species: RLO_RIF_CHLX_71_12 (66.67%)	3	1620 bp	71.11	8.37	110.93
13_1_20cm_3_scaffold_430147 Species: R_Acidobacteria_65_29 (50%)	2	1447 bp	54.46	7.11	110.92
13_1_20cm_3_scaffold_277413 Species: Candidatus Koribacter versatilis (50%)	2	1063 bp	54.00	4.72	110.91
13_1_20cm_3_scaffold_170542 Species: R_Betaproteobacteria_65_24 (50%)	2	1377 bp	68.26	7.29	110.89
13_1_20cm_3_scaffold_279196 Species: Yersinia intermedia (50%)	2	1058 bp	68.43	5.46	110.87
13_1_20cm_3_scaffold_116791 Species: Patulibacter medicamentivorans (50%)	2	1627 bp	72.40	8.48	110.82
13_1_20cm_3_scaffold_220637 Species: R_Acidobacteria_68_18 (50%)	2	1221 bp	55.12	5.14	110.81
13_1_20cm_3_scaffold_301927 Species: uncultured bacterium (50%)	2	1674 bp	59.50	9.15	110.75
13_1_20cm_3_scaffold_112995 Domain: Bacteria (66.67%)	3	1650 bp	70.79	3.35	110.73
13_1_20cm_3_scaffold_291435	2	1027 bp	65.63	7.82	110.71
13_1_20cm_3_scaffold_218323 Domain: Bacteria (50%)	4	1228 bp	67.02	4.09	110.67
13_1_20cm_3_scaffold_292242 Species: uncultured bacterium (50%)	2	1025 bp	57.76	2.45	110.63
13_1_20cm_3_scaffold_168064 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (100%)	2	1386 bp	62.34	2.90	110.61
13_1_20cm_3_scaffold_175140 Species: R_Saccharibacteria_47_12 (50%)	2	1360 bp	50.44	3.69	110.52
13_1_20cm_3_scaffold_317614 Species: GWC2_Gemmatimonadetes_71_10_curated (50%)	2	1420 bp	70.28	6.72	110.49
13_1_20cm_3_scaffold_403074 Species: uncultured bacterium (66.67%)	3	1469 bp	54.19	5.64	110.48
13_1_20cm_3_scaffold_234742 Species: uncultured bacterium 12AC_lac13 (50%)	2	1182 bp	61.76	7.22	110.41

Displaying items 101-150 of 305424 in total

13_1_20cm_3_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_20cm_3_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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