ggKbase home page

NECEvent2014_10_1_scaffold_253_3

Organism: NECEvent2014_10_1_Lactobacillus_crispatus_36_608

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(2120..2611)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=5 Tax=Lactobacillus crispatus RepID=C2KDK6_9LACO similarity UNIREF
DB: UNIREF100
  • Identity: 98.8
  • Coverage: 163.0
  • Bit_score: 321
  • Evalue 4.10e-85
  • rbh
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EEX29109.1}; TaxID=575597 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacill similarity UNIPROT
DB: UniProtKB
  • Identity: 98.8
  • Coverage: 163.0
  • Bit_score: 321
  • Evalue 5.70e-85
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 90.8
  • Coverage: 163.0
  • Bit_score: 299
  • Evalue 8.00e-79

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Lactobacillus crispatus → Lactobacillus → Lactobacillales → Bacilli → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 492
ATGACAAGTCAAAAATATTTTGAAGAAGCATGGAAAAATCGTAAGTTAGTTGGTGGTGCCTTAAAGGCGGCACATGTTCGACCGGACTATCATCTCTATGAAGATCTGTTGCAAGAAGGTGTAATTTTGTATGCCGAGATGTTGCGCAAATTAGATGGGCAAAAGGTTCGCAGTGAGATTGATAAGCTTAGCTTCAAAAAGGTTCTTTGGCAAACAATCGATGCTCTGCGCCGAGAGCAACGCGTATGTGAACGCAATACTGCAATTGATAAGGCTTATGACTTAGGTAAAACAGAGGCATGGGATAATCTTGTAGCTTTAAAGAATGAGATTAAGAAACTAAATCAACTTGAGCAAGTAATTCTTTTTGAGCATTTGCTTGAGAAAAAGACAATTACGCAGTTAGTTAAAGAATGCGGTATACCGCGTATTACGTTGAAACGATTGAAAAAGCAGCTTTTAGGTAAATTACGTAATGTGATGGAACAATAA
PROTEIN sequence
Length: 164
MTSQKYFEEAWKNRKLVGGALKAAHVRPDYHLYEDLLQEGVILYAEMLRKLDGQKVRSEIDKLSFKKVLWQTIDALRREQRVCERNTAIDKAYDLGKTEAWDNLVALKNEIKKLNQLEQVILFEHLLEKKTITQLVKECGIPRITLKRLKKQLLGKLRNVMEQ*