ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

NECEvent2014_5_6_scaffold_1516_4

Organism: NECEvent2014_5_6_Clostridium_perfringens_30_4_partial

partial RP 23 / 55 BSCG 20 / 51 ASCG 8 / 38
Location: 1305..1994

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L1 n=6 Tax=Clostridium perfringens RepID=RL1_CLOP1 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 229.0
  • Bit_score: 451
  • Evalue 6.30e-124
  • rbh
rplA; 50S ribosomal protein L1 similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 229.0
  • Bit_score: 451
  • Evalue 1.80e-124
50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strai similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 229.0
  • Bit_score: 451
  • Evalue 8.80e-124

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium perfringens → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 690
ATGGGAAAGAAATATATTGAAAGTTCAAAATTAATAGATAAAAATGCATTATATACTCCAGCAGAAGCTTTAGAGCTTGCTGTTAAAACTGCAAAAGCTAAATTCGATGAAACTATCGAATTACACGTAAGATTAGGTGTAGACCCAAGACATGCTGACCAACAAGTTAGAGGAGCTGTTGTTCTTCCACACGGAACTGGTAAAGATGTTAAAGTTTTAGTTTTCGCTAAAGGTGAGAAAGCTAAAGAAGCTGAAGCTGCAGGAGCAGATTTCGTTGGAGCTGACGAATTAGTACAAAAAATTCAAGGTGAAAACTGGTTTGATTATGATGTAGTTGTTGCTACTCCAGATATGATGGGTGTAGTTGGTAGATTAGGTAGAGTATTAGGACCAAAAGGTTTAATGCCAAACCCAAAATCAGGAACAGTTACATTTGACGTAGCTAACGCTATAAAAGAAATCAAAGCAGGTAAAGTTGAATATAGAGTAGATAAGACTGCTATAGTTCACTGCCCAATAGGAAAGAAATCTTTCGGAACTGAGAAATTAGTTGAAAACTTCAAAGCTTTAATGGATGCTTTAGTAAAAGCTAAACCAGCTGCTGCTAAAGGACAATACTTAAAATCAGTTTCAGTTTCAGCTACTATGGGACCTGGAGCTAAAGTTAACCCAGCTAAAGTTTTAGATTAA
PROTEIN sequence
Length: 230
MGKKYIESSKLIDKNALYTPAEALELAVKTAKAKFDETIELHVRLGVDPRHADQQVRGAVVLPHGTGKDVKVLVFAKGEKAKEAEAAGADFVGADELVQKIQGENWFDYDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD*