ggKbase home page

NECEvent2014_5_7_scaffold_3275_2

Organism: NECEvent2014_5_7_Peptoclostridium_sordelli-rel_28_6

near complete RP 49 / 55 MC: 2 BSCG 50 / 51 MC: 3 ASCG 13 / 38
Location: comp(91..807)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoc similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 238.0
  • Bit_score: 477
  • Evalue 1.20e-131
rluB; Ribosomal large subunit pseudouridine synthaseB (EC:4.2.1.70) similarity KEGG
DB: KEGG
  • Identity: 72.3
  • Coverage: 238.0
  • Bit_score: 366
  • Evalue 5.90e-99
Pseudouridine synthase n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CQP9_CLOSO similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 238.0
  • Bit_score: 477
  • Evalue 8.50e-132
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

[Clostridium] sordellii → Peptoclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 717
ATGAGAATTAATAAATATATAGCTTCTTGTGGAGTGGCTTCTAGAAGAAAAGCAGAAGAATTAATAAATGCAGGAAGAGTCAAAGTGAATGGAAAAATAATAAATGAATTATCATTTCAAGTAGATGAAAATAATGATAGAGTAGAAGTAGATGAAAAGCTAATCGGTCTTGAAGAACGATTAGTTTATATAATGTTAAACAAACCTGAAGGATATGTAACTACAGTAAAAGATCAATTTGATAGAAAAAGCGTTATAGATTTGGTGAAAGATGTAGGAGAGAGAGTATATCCTATTGGGAGATTAGATTATGAAACTAGTGGACTATTGCTTTTAACAAATGATGGAGATTTAACATATAAATTAACTCATCCAAAGCATGAAGTTGATAAAACTTATATAGCTACTTTAAAAGGAATTCCTACATTAAATGAAATGAAAAACTTTGAAAAAGGATTATATATAGAAGATTATAAAACAGCTCCTGCTAAGATCAAAGTATTAAAGAAAAATGAAGAAAAAAATTATTGCGTATGTGAAATTAAAATACATGAAGGTAGAAATAGACAGGTAAGAAAAATGTGTAGGGCTATAAACCATCCAGTAATGAACTTAAGGAGAAAAGCTATGGGTAAAATAGTTTTAAAGGATGTAGAAATAGGACAATATAGATATTTAACTCAAGAAGAAATAGATTATTTAAAAACAGTAAAATAG
PROTEIN sequence
Length: 239
MRINKYIASCGVASRRKAEELINAGRVKVNGKIINELSFQVDENNDRVEVDEKLIGLEERLVYIMLNKPEGYVTTVKDQFDRKSVIDLVKDVGERVYPIGRLDYETSGLLLLTNDGDLTYKLTHPKHEVDKTYIATLKGIPTLNEMKNFEKGLYIEDYKTAPAKIKVLKKNEEKNYCVCEIKIHEGRNRQVRKMCRAINHPVMNLRRKAMGKIVLKDVEIGQYRYLTQEEIDYLKTVK*