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NECEvent2014_5_7_scaffold_1964_5

Organism: NECEvent2014_5_7_Pseudomonas_aeruginosa_66_6

near complete RP 47 / 55 MC: 3 BSCG 46 / 51 ASCG 12 / 38 MC: 1
Location: comp(3011..3445)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-subfamily sigma-70 factor n=2 Tax=Pseudomonas aeruginosa RepID=U8RGB1_PSEAI similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 144.0
  • Bit_score: 277
  • Evalue 6.00e-72
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:ETD48549.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomon similarity UNIPROT
DB: UniProtKB
  • Identity: 99.3
  • Coverage: 144.0
  • Bit_score: 277
  • Evalue 1.10e-71
RNA polymerase ECF-subfamily sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 98.6
  • Coverage: 144.0
  • Bit_score: 275
  • Evalue 6.40e-72

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 435
CGTGGACTGATCGTCGAGGGGCTCGGCCTGGTCGAGCGGGCCCTGGCCAGCCGCCGTTTCGGGGCCTACACCCTGCAGGCGGCCATCGTCGCGGTGCATGCCCAGGCGCCGCGCGCCGAGGACACCGACTGGGCACGGATCGTCGCCCTCTACGACGCGCTGCTGTACCTGGCGCCGTCGCCGGTGGTCGAACTCAACCGCGCCGTGGCCTTGGCCATGCGCGATGGCGTCGAGGTCGGGCTGGCCGTGGTCGATGCGTTGCTGGCGCGAGGTGAACTGGCCGATTACCACCTGGCGCACTCGGCGCGTGCCGACTTCTGCCGCCGTCTCGGTCGCCGCCGCGAGGCCCGCGAGGCCTACCGCGCGGCGCTGGCCCTGGCGCGCCAGGAGCCGGAGCGGCGCTTCATCGAGCAGCGCCTGCGCGAACTCGATTGA
PROTEIN sequence
Length: 145
RGLIVEGLGLVERALASRRFGAYTLQAAIVAVHAQAPRAEDTDWARIVALYDALLYLAPSPVVELNRAVALAMRDGVEVGLAVVDALLARGELADYHLAHSARADFCRRLGRRREAREAYRAALALARQEPERRFIEQRLRELD*