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NECEvent2014_5_1_scaffold_1438_1

Organism: NECEvent2014_5_1_Pseudomonas_aeruginosa_rel_66_5

partial RP 39 / 55 MC: 2 BSCG 35 / 51 ASCG 10 / 38 MC: 2
Location: 1..2685

Top 3 Functional Annotations

Value Algorithm Source
rpoC; DNA-directed RNA polymerase, beta' subunit (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 894.0
  • Bit_score: 1742
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 894.0
  • Bit_score: 1742
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Pseudomonas aeruginosa VRFPA08 RepID=V8E2Z1_PSEAI similarity UNIREF
DB: UNIREF100
  • Identity: 99.9
  • Coverage: 894.0
  • Bit_score: 1741
  • Evalue 0.0
  • rbh

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2685
GTGGTAATGGGTCTGTACTACATGACCCGTGAAGCGATCAACGCGAAGGGCGAGGGCATGGCCTTCGCCGACCTGCAGGAAGTCGACCGCGCCTACCGCAGCGGCCAGGCGTCCCTGCACGCTCGCGTGAAAGTGCGCATCAACGAAAAGATCAAGGGTGAAGACGGCCAACTGACCGCCAATACCCGTATCGTCGACACCACCGTCGGCCGCGCGCTGCTGTTCCAGGTCGTTCCGGCCGGCCTGCCGTTCGACGTGGTCAACCAGTCGATGAAGAAGAAGGCGATCTCCAAGCTGATCAACCACTGCTATCGCGTGGTGGGTCTGAAGGACACCGTCATCTTCGCCGACCAGCTGATGTACACCGGTTTCGCCTACTCGACCATTTCCGGCGTGTCCATCGGCGTCAACGACTTCGTCATCCCGGACGAGAAGGCGCGGATCATCAACGCCGCCACCGACGAAGTGAAGGAGATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTGATCGACCTGTGGTCGAAGGCCAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCGTCGATCGCGAGGGCAAGGAAGTCGACCAGGAGTCCTTCAACTCCATGTACATGATGGCTGACTCGGGTGCGCGGGGCTCCGCGGCCCAGATCCGTCAGCTGGCAGGTATGCGCGGCCTGATGGCCAAGCCGGACGGCTCGATCATCGAGACCCCGATCACCGCGAACTTCCGGGAAGGCCTGAACGTACTCCAGTACTTCATCTCCACCCACGGTGCTCGTAAGGGTCTGGCGGATACCGCGCTGAAGACCGCGAACTCCGGTTACCTGACCCGTCGTCTGGTCGACGTGGCCCAGGATCTGGTAGTGACCGAGATCGATTGCGGTACCGAGCACGGCCTGCTGATGTCGCCGCACATCGAAGGCGGCGACGTGGTAGAACCGCTCGGCGAGCGCGTGCTCGGCCGTGTGATCGCGCGCGACGTGTTCAAGCCGGGCAGCGACGAGGTCATCGTGCCGGCCGGCACCCTGATCGACGAGAAGTGGGTCGACTTCCTCGAAGTGATGAGCGTCGACGAAGTGGTGGTGCGTTCCCCGATCACCTGCGAAACCCGTCATGGCATCTGCGCCATGTGCTACGGCCGCGACCTGGCCCGTGGCCATCGCGTCAACATCGGCGAGGCGGTCGGTGTCATCGCTGCCCAGTCCATCGGTGAGCCGGGCACCCAGCTGACCATGCGTACCTTCCACATCGGCGGTGCGGCCAGCCGGACCTCCGCGGCCGACAACGTCCAGGTGAAGAACGGCGGCACCATCCGCCTGCACAACCTGAAGCATGTGGTTCGTGCCGACGGCGCGCTGGTCGCGGTTTCCCGTTCCGGCGAACTGGCGGTTGCCGACGACTTCGGTCGCGAGCGCGAGCGCTACAAGCTGCCGTACGGTGCGGTGATCTCGGTCAAGGAAGGTGACAAGGTCGACCCGGGCGCTATCGTCGCCAAGTGGGACCCGCACACCCACCCGATCGTCACCGAGGTGGACGGTACCGTGGCCTTCGTGGGCATGGAAGAGGGCATCACCGTCAAGCGTCAGACCGACGAACTGACCGGCCTGACCAACATCGAAGTGATGGATCCGAAGGACCGTCCGGCTGCCGGCAAGGACATCCGTCCGGCCGTGAAGCTGATCGATGCCGCGGGCAAGGACCTGCTGCTGCCGGGTACCGACGTACCGGCGCAGTACTTCCTGCCGGCCAACGCCCTGGTCAACCTGACCGACGGCGCCAAGGTGAGCATCGGTGACGTTGTCGCGCGTATCCCGCAGGAAACCTCGAAGACCCGTGACATCACCGGTGGTCTGCCGCGCGTTGCCGACCTGTTCGAGGCTCGTCGTCCGAAAGAGCCTTCGATCCTGGCGGAAATCAGCGGCACCATCTCCTTCGGCAAGGAGACCAAGGGCAAGCGCCGCCTGGTCATCACGCCGAACGATGGCAGCGATCCGTACGAGGAGCTGATTCCGAAGTGGCGTCACCTGAACGTGTTCGAAGGCGAACAGGTGAACCGCGGCGAAGTCATCTCCGACGGTCCGAGCAACCCGCACGACATCCTGCGCCTGCTGGGCGTGAGCTCGCTGGCGAAGTACATCGTCAACGAGATCCAGGACGTCTACCGTCTGCAGGGCGTGAAGATCAACGACAAGCACATCGAGACCATCCTGCGTCAGATGCTGCGCAAGGTCGAAGTCAGCGAGTCCGGCGACTCCAGCTTCATCAAAGGCGACCAGGTGGAACTCACCCAGGTGCTGGAAGAGAACGAACAGCTCGGTACCGAGGACAAGTTCCCGGCCAAGTACGAGCGCGTTCTGCTGGGTATCACCAAGGCTTCCCTGTCGACCGAGTCGTTCATTTCCGCGGCGTCGTTCCAGGAGACCACCCGCGTCCTCACCGAGGCGGCGGTCACCGGCAAGCGCGACTTCCTGCGTGGTCTGAAAGAGAACGTGGTCGTGGGTCGCCTGATCCCGGCCGGTACCGGTCTGGCTTACCACAGCGAGCGCAAGCGTCAGCGCGACCTCGGCAAGCCGCAGCGTGTGAGTGCCAGCGAGGCGGAAGCCGCACTGACCGAAGCGCTGAACTCGAGCGGTAACTAA
PROTEIN sequence
Length: 895
VVMGLYYMTREAINAKGEGMAFADLQEVDRAYRSGQASLHARVKVRINEKIKGEDGQLTANTRIVDTTVGRALLFQVVPAGLPFDVVNQSMKKKAISKLINHCYRVVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIINAATDEVKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDREGKEVDQESFNSMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMSPHIEGGDVVEPLGERVLGRVIARDVFKPGSDEVIVPAGTLIDEKWVDFLEVMSVDEVVVRSPITCETRHGICAMCYGRDLARGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADNVQVKNGGTIRLHNLKHVVRADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDPGAIVAKWDPHTHPIVTEVDGTVAFVGMEEGITVKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAVKLIDAAGKDLLLPGTDVPAQYFLPANALVNLTDGAKVSIGDVVARIPQETSKTRDITGGLPRVADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSNPHDILRLLGVSSLAKYIVNEIQDVYRLQGVKINDKHIETILRQMLRKVEVSESGDSSFIKGDQVELTQVLEENEQLGTEDKFPAKYERVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRQRDLGKPQRVSASEAEAALTEALNSSGN*