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NECEvent2014_5_1_scaffold_2477_1

Organism: NECEvent2014_5_1_Pseudomonas_aeruginosa_rel_66_5

partial RP 39 / 55 MC: 2 BSCG 35 / 51 ASCG 10 / 38 MC: 2
Location: comp(31..1878)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Pseudomonas aeruginosa BWHPSA026 RepID=U8MV20_PSEAI similarity UNIREF
DB: UNIREF100
  • Identity: 88.1
  • Coverage: 615.0
  • Bit_score: 1057
  • Evalue 0.0
  • rbh
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 88.1
  • Coverage: 615.0
  • Bit_score: 1057
  • Evalue 0.0
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; P similarity UNIPROT
DB: UniProtKB
  • Identity: 88.1
  • Coverage: 615.0
  • Bit_score: 1057
  • Evalue 0.0

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1848
ATGTCCGGAAAAGCGCAACAGCAATCTCGTCTGAAAGAGTTGATCGCCCGAGGCCGTGAGCAGGGATACCTGACTTACGCGGAGGTCAACGACCACCTGCCGGAGGATATTTCCGATCCGGAACAGGTGGAAGACATCATCCGCATGATCAACGACATGGGGATCAACGTATTCGAGACAGCCCCGGATGCGGATGCCCTGTTGCTGGCCGAGGCGGATACCGACGAAGCCGCAGCGGAAGAAGCCGCAGCGGCCCTGGCCGCGGTGGAAAGCGACATCGGTCGCACCACCGACCCGGTGCGCATGTACATGCGTGAAATGGGTACCGTGGAACTGCTGACCCGCGAAGGCGAGATCGAAATCGCCAAGCGCATCGAGGAAGGCATCCGCGAAGTGATGAGCGCCATCGCCCAGTTCCCGGGCACGGTGGACAGCATCCTGGCCGACTACAATCGCATCGTCGCCGAAGGCGGTCGCCTCTCCGATGTCCTCAGCGGCTATATCGATCCCGATGACGGCAGCCTGCCCGCCGAAGAGGTGGAGCCGGTCAACCTGAAGGACGATTCCGCCGACTCGAAAGAGAAGGACGACGAGGAAGAAGAAAGCGACGACAGCAGCGACAGCGACGACGAAGGCGACGGCGGTCCGGATCCGGAAGAAGCCCGCCTGCGTTTCACCGCGGTCTCCGAGCAACTCGACAAGGCCAAGAAGGCCCTGAAGAAGCACGGTCGCGGCAGCAAGCAGGCCACCGCCGAACTCACCGGCCTGGCCGAGCTGTTCATGCCGATCAAGCTGGTGCCCAAGCAGTTCGACGCCCTGGTGGCCCGCGTGCGCTCCGCCCTGGAAGGCGTGCGCGCCCAGGAACGCGCCATCATGCAGCTCTGCGTGCGTGACGCGCGCATGCCGCGTGCCGACTTCCTGCGCCTGTTCCCGAACCACGAGACCGACGAGAAGTGGGTCGACAGCGTCCTGAAGAGCAAGCCGAAGTACGCCGAGGCCATCGAGCGCCTGCGCGACGACATCCTGCGCAACCAGCAGAAGCTGGCGGCCCTGGAAAGCGAGGTCGAGCTGACCGTCGCCGAGATCAAGGAAATCAACCGCGCGATGTCGATCGGCGAAGCCAAGGCTCGCCGGGCGAAGAAGGAAATGGTCGAGGCCAACCTGCGCCTGGTGATTTCCATCGCCAAGAAGTACACCAACCGCGGCCTGCAATTCCTCGACCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTGGACAAGTTCGAATACCGTCGTGGCTACAAATTCTCTACCTACGCCACCTGGTGGATTCGCCAGGCGATTACCCGCGCGATCGCCGATCAGGCGCGTACGATTCGTATTCCGGTGCATATGGTGGAAACCATCAACAAACTTTCGCGAACGGCCCGCAATTTATTGCAGGAGCTGGGACGCGAAGCAACGCCGGAAGAAATCGCCGAGCAAATGGACATTACCGTGGAACGTGTGCGCGAGATCATGAAAATTTCGCAGGAACCGGTTTCGTTGGAAACGCCGATCGGTGAAGAAGAAGATTCCCACTTGGTGGAATTTATCGAAGACCGCAATGCCGTCGCTCCGGAAGAAGCAGCTTCCGCCATTTTGCTCAAGGAGCAGGTCGATGATATTTTGCAAGGTCTTACCAAACGCGAACGGGAAGTTATCTATTTGCGTTTCGGGTTAAAAGACGGTAAACAGAGAACGCTGGAAGAAGTCGGGCAATACTTTGACGTTACGCGCGAACGGATTCGTCAGATCGAGCGCAAAGCCTTGGAAAAATTGCGCAGCCGCGGGAAACGCGAGAAGATTACCGACTACCTCTGA
PROTEIN sequence
Length: 616
MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFETAPDADALLLAEADTDEAAAEEAAAALAAVESDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAQFPGTVDSILADYNRIVAEGGRLSDVLSGYIDPDDGSLPAEEVEPVNLKDDSADSKEKDDEEEESDDSSDSDDEGDGGPDPEEARLRFTAVSEQLDKAKKALKKHGRGSKQATAELTGLAELFMPIKLVPKQFDALVARVRSALEGVRAQERAIMQLCVRDARMPRADFLRLFPNHETDEKWVDSVLKSKPKYAEAIERLRDDILRNQQKLAALESEVELTVAEIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLSRTARNLLQELGREATPEEIAEQMDITVERVREIMKISQEPVSLETPIGEEEDSHLVEFIEDRNAVAPEEAASAILLKEQVDDILQGLTKREREVIYLRFGLKDGKQRTLEEVGQYFDVTRERIRQIERKALEKLRSRGKREKITDYL*