Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
RNA polymerase sigma factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUK3_SYNAS (db=UNIREF evalue=8.0e-126 bit_score=453.0 identity=76.22 coverage=99.3031358885017) | similarity |
UNIREF
DB: UNIREF |
76.22 | 99.3 | 453 | 8.00e-126 | sat:SYN_00639 |
RNA polymerase sigma-B factor | similarity |
KEGG
DB: KEGG |
75.9 | 286.0 | 436 | 7.30e-120 | sat:SYN_00639 |
RNA polymerase sigma-B factor | rbh |
KEGG
DB: KEGG |
75.9 | 286.0 | 436 | 7.30e-120 | sat:SYN_00639 |
SIGMA70_1 (db=PatternScan db_id=PS00715 from=71 to=84 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | sat:SYN_00639 |
rpoH_proteo: alternative sigma factor Rpo (db=HMMTigr db_id=TIGR02392 from=8 to=276 evalue=1.0e-125 interpro_id=IPR012759 interpro_description=RNA polymerase sigma factor RpoH, proteobacteria GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: zinc ion binding (GO:0008270), Biological Process: | iprscan |
interpro
DB: HMMTigr |
null | null | null | 1.00e-125 | sat:SYN_00639 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=3 to=117 evalue=2.0e-40 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 2.00e-40 | sat:SYN_00639 |
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=13 to=116 evalue=7.7e-33) | iprscan |
interpro
DB: Gene3D |
null | null | null | 7.70e-33 | sat:SYN_00639 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=71 to=84 evalue=9.0e-21 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 9.00e-21 | sat:SYN_00639 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=95 to=103 evalue=9.0e-21 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 9.00e-21 | sat:SYN_00639 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=225 to=237 evalue=9.0e-21 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 9.00e-21 | sat:SYN_00639 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=259 to=270 evalue=9.0e-21 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 9.00e-21 | sat:SYN_00639 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=244 to=259 evalue=9.0e-21 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 9.00e-21 | sat:SYN_00639 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=42 to=274 evalue=2.5e-19 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 2.50e-19 | sat:SYN_00639 |
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=47 to=115 evalue=5.3e-19 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 5.30e-19 | sat:SYN_00639 |
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=221 to=270 evalue=6.7e-16 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 6.70e-16 | sat:SYN_00639 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=180 to=276 evalue=6.8e-14 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 6.80e-14 | sat:SYN_00639 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=207 to=271 evalue=5.2e-11 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 5.20e-11 | sat:SYN_00639 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=122 to=197 evalue=1.0e-06 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.00e-06 | sat:SYN_00639 |
Sigma70_r1_2 (db=HMMPfam db_id=PF00140 from=9 to=35 evalue=8.1e-06 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 8.10e-06 | sat:SYN_00639 |
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" |
UNIPROT
DB: UniProtKB |
99.7 | 286.0 | 558 | 6.40e-156 | K1WXE1_9BACT | |
RNA polymerase sigma factor n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LUK3_SYNAS | similarity |
UNIREF
DB: UNIREF90 |
76.2 | null | 436 | 4.80e-120 | sat:SYN_00639 |