ggKbase home page

NECEvent2014_6_5_scaffold_775_2

Organism: NECEvent2014_6_5_Clostridium_paraputrificum_30_193

near complete RP 48 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38 MC: 1
Location: 836..1399

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:ERK29748.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URN similarity UNIPROT
DB: UniProtKB
  • Identity: 40.2
  • Coverage: 189.0
  • Bit_score: 146
  • Evalue 3.80e-32
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 34.4
  • Coverage: 183.0
  • Bit_score: 119
  • Evalue 7.60e-25

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium intestinale → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 564
ATGAATGATAAAGAAATTGTAAGAGCTTTAAAAGAAAGAGAGCAAAAAGGAATCGAAAGTATTATTGATAAGTACGGTAAATTAATATATGGAGTAATAAAATATACTGTGAAAAAGAGGGATAGTGAGAGTGATTTTGAGGATATATTTTATGAGGTAATAATGAAGATATGGGACTCAATAATTCAATATGATGAAGAAAAAAGTGTGCTGAAAAATTTTATTATAAGTATAACTAAATATACAGCCGTAGATTATATAAGAAAAGTATCAAGAAGAAGAGAGAGTTATTCTGAAAAAGAATTAGATAATGATTTACAGTATTGCACATACAACTATGATTCTATAATTGAGCAAGAGAACTTTGATGAATTATTAGGTTGTTTAAGTGATATTGACAGGGAAATATTTATTAGACGATACTATTTTGATGAAGAAATTACGGCCATAGCAGTGAATTTAAATAAAAGTGAAGATTATATATATACAAGATTATCTAGGGGAAGGAAAAAAATAAAAGAAGAATTAGGAGGTGTAAGAAATGTCGGACAAGATAATAAATAG
PROTEIN sequence
Length: 188
MNDKEIVRALKEREQKGIESIIDKYGKLIYGVIKYTVKKRDSESDFEDIFYEVIMKIWDSIIQYDEEKSVLKNFIISITKYTAVDYIRKVSRRRESYSEKELDNDLQYCTYNYDSIIEQENFDELLGCLSDIDREIFIRRYYFDEEITAIAVNLNKSEDYIYTRLSRGRKKIKEELGGVRNVGQDNK*